RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ZNF564Q8TBZ8 553 aaPredicted RBP20.91■□□□□ 0.94
VPS28-206ENST00000526734 HCAR2Q8TDS4 363 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 ASB12Q8WXK4 309 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 SLC39A8Q9C0K1 460 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.91■□□□□ 0.94
VPS28-206ENST00000526734 LHX3Q9UBR4 397 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 RNF103O00237 685 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 IL1R2P27930 398 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 SERPINB6P35237 376 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 CSNK1DP48730 415 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 IL10RBQ08334 325 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 DCP2Q8IU60 420 aaKnown RBP20.9■□□□□ 0.94
VPS28-206ENST00000526734 CNGA4Q8IV77 575 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 ARHGAP12Q8IWW6 846 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 RNF214Q8ND24 703 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 RHBDD1Q8TEB9 315 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 KLHDC7BQ96G42 594 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 CELF6Q96J87 481 aaKnown RBP20.9■□□□□ 0.94
VPS28-206ENST00000526734 KLHL32Q96NJ5 620 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 ZNF599Q96NL3 588 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 CAMK1GQ96NX5 476 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 TUBGCP5Q96RT8 1024 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 SP110Q9HB58 689 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 ABHD10Q9NUJ1 306 aa20.9■□□□□ 0.94
VPS28-206ENST00000526734 ZFR2Q9UPR6 939 aaKnown RBP20.9■□□□□ 0.94
VPS28-206ENST00000526734 NEMP1O14524 444 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 SLC31A1O15431 190 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 MFAP3LO75121 409 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 RARAP10276 462 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 PRLRP16471 622 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 SLC25A11Q02978 314 aaKnown RBP20.89■□□□□ 0.93
VPS28-206ENST00000526734 CYTH1Q15438 398 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 SMTNL2Q2TAL5 461 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 ASTE1Q2TB18 679 aaPredicted RBP20.89■□□□□ 0.93
VPS28-206ENST00000526734 SARM1Q6SZW1 724 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 TMCO3Q6UWJ1 677 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 POLNQ7Z5Q5 900 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 DENND6BQ8NEG7 585 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 HSPH1Q92598 858 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 ZNF641Q96N77 438 aaPredicted RBP20.89■□□□□ 0.93
VPS28-206ENST00000526734 CSPG4P5Q96PW8 444 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 SLC17A9Q9BYT1 436 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 CTTNBP2NLQ9P2B4 639 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 WASF3Q9UPY6 502 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 HS3ST3A1Q9Y663 406 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 PCNX2A6NKB5 2137 aa20.89■□□□□ 0.93
VPS28-206ENST00000526734 A6NNZ2 444 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 J3KR12 359 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 KCNK3O14649 394 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 AREL1O15033 823 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 AKR1B10O60218 316 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 PALMO75781 387 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 ITGAVP06756 1048 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 EPHA8P29322 1005 aaPredicted RBP20.88■□□□□ 0.93
VPS28-206ENST00000526734 GKP32189 559 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 ABL2P42684 1182 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 RENBPP51606 427 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 FAM193AP78312 1265 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 SGCGQ13326 291 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 SEL1L3Q68CR1 1132 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 ABI3BPQ7Z7G0 1075 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 NPWQ8N729 165 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 VOPP1Q96AW1 172 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 LENG8Q96PV6 779 aaPredicted RBP20.88■□□□□ 0.93
VPS28-206ENST00000526734 CINPQ9BW66 212 aaPredicted RBP20.88■□□□□ 0.93
VPS28-206ENST00000526734 C1QTNF2Q9BXJ5 285 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 PCDH18Q9HCL0 1135 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 NEUROG3Q9Y4Z2 214 aa20.88■□□□□ 0.93
VPS28-206ENST00000526734 TSPAN11A1L157 253 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 DFFAO00273 331 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 TNFSF14O43557 240 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 PROSCO94903 275 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 TMEM253P0C7T8 217 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 FTH1P19P0C7X4 201 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 THEGLP0DJG4 465 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 XPAP23025 273 aaPredicted RBP20.87■□□□□ 0.93
VPS28-206ENST00000526734 MAN1A1P33908 653 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 HSPA9P38646 679 aaKnown RBP20.87■□□□□ 0.93
VPS28-206ENST00000526734 NSUN2Q08J23 767 aaKnown RBP eCLIP20.87■□□□□ 0.93
VPS28-206ENST00000526734 ELP6Q0PNE2 266 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 KRT81Q14533 505 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 BRAT1Q6PJG6 821 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 KYAT3Q6YP21 454 aaKnown RBP20.87■□□□□ 0.93
VPS28-206ENST00000526734 TTC7BQ86TV6 843 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 SPATS2Q86XZ4 545 aaKnown RBP20.87■□□□□ 0.93
VPS28-206ENST00000526734 LRRC49Q8IUZ0 686 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 SAP25Q8TEE9 199 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 ADAMTS14Q8WXS8 1223 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 IFT43Q96FT9 208 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 CCDC42Q96M95 316 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 C1QTNF7Q9BXJ2 289 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 SEPT3Q9UH03 358 aa20.87■□□□□ 0.93
VPS28-206ENST00000526734 IPO11Q9UI26 975 aaKnown RBP20.87■□□□□ 0.93
VPS28-206ENST00000526734 TCF4P15884 667 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 CFAP58Q5T655 872 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 GCNT7Q6ZNI0 430 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 RAB44Q7Z6P3 723 aaPredicted RBP20.86■□□□□ 0.93
VPS28-206ENST00000526734 BBS5Q8N3I7 341 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 FAM71BQ8TC56 605 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 TSC1Q92574 1164 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms