RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PDFQ9HBH1 243 aa11.66□□□□□ -0.54
VCAN-212ENST00000515397 PCDH18Q9HCL0 1135 aa11.66□□□□□ -0.54
VCAN-212ENST00000515397 PREBQ9HCU5 417 aa11.66□□□□□ -0.54
VCAN-212ENST00000515397 PCDHB9Q9Y5E1 797 aa11.66□□□□□ -0.54
VCAN-212ENST00000515397 FADS3Q9Y5Q0 445 aa11.66□□□□□ -0.54
VCAN-212ENST00000515397 ZSCAN5CA6NGD5 496 aaPredicted RBP11.65□□□□□ -0.54
VCAN-212ENST00000515397 ARHGAP42A6NI28 874 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 UPK3BL1B0FP48 263 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 UPK3BL2E5RIL1 263 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 NEMP1O14524 444 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 MUSKO15146 869 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 SPINT1O43278 529 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 MMP20O60882 483 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 PALMO75781 387 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 MAP3K6O95382 1288 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 IGSF6O95976 241 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 H2AFZP0C0S5 128 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 TIMP2P16035 220 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 IL4RP24394 825 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 PMLP29590 882 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 ARL4AP40617 200 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 NDST2P52849 883 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 CDH6P55285 790 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 GEMIN4P57678 1058 aaKnown RBP11.65□□□□□ -0.54
VCAN-212ENST00000515397 NXPH1P58417 271 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 TAS2R40P59535 323 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 SLC14A1Q13336 389 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 KRT81Q14533 505 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 MESDQ14696 234 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 DPYSL2Q16555 572 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 INO80DQ53TQ3 878 aaPredicted RBP11.65□□□□□ -0.54
VCAN-212ENST00000515397 ZNF542PQ5EBM4 170 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 AFMIDQ63HM1 303 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 NAPEPLDQ6IQ20 393 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 H2AFVQ71UI9 128 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 CAMK1DQ8IU85 385 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 CHCHD4Q8N4Q1 142 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 CTNNBL1Q8WYA6 563 aaPredicted RBP11.65□□□□□ -0.54
VCAN-212ENST00000515397 CCDC42Q96M95 316 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 CSPG4P5Q96PW8 444 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 ELF4Q99607 663 aaPredicted RBP11.65□□□□□ -0.54
VCAN-212ENST00000515397 SLC17A9Q9BYT1 436 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 SP110Q9HB58 689 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 IPO11Q9UI26 975 aaKnown RBP11.65□□□□□ -0.54
VCAN-212ENST00000515397 PCOLCE2Q9UKZ9 415 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 TFR2Q9UP52 801 aa11.65□□□□□ -0.54
VCAN-212ENST00000515397 EPG5Q9HCE0 2579 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 A0A1B0GTQ1 180 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 POM121BA6NF01 834 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 AKR1B15C9JRZ8 316 aaPredicted RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 PRAMEF26H0Y7S4 382 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 H3BRJ5 948 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 HYAL3O43820 417 aaPredicted RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 SDC3O75056 442 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 CBFA2T3O75081 653 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 TPM1P09493 284 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 ATXN1LP0C7T5 689 aaKnown RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 TNNT1P13805 278 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 HTR7P34969 479 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 HCAR3P49019 387 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 TBX2Q13207 712 aaPredicted RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 TRIM14Q14142 442 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 ACAP1Q15027 740 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 ZNF423Q2M1K9 1284 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 SETMARQ53H47 684 aaPredicted RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 SLCO6A1Q86UG4 719 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 MARCH9Q86YJ5 346 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 PSTKQ8IV42 348 aaKnown RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 PLPP6Q8IY26 295 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.64□□□□□ -0.55
VCAN-212ENST00000515397 NIPA2Q8N8Q9 360 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 MFSD2AQ8NA29 543 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 OR13H1Q8NG92 308 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 SLC35G2Q8TBE7 412 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 KLHDC7BQ96G42 594 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 FEM1CQ96JP0 617 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 NCAPGQ9BPX3 1015 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 WRAP53Q9BUR4 548 aaKnown RBP11.64□□□□□ -0.55
VCAN-212ENST00000515397 CALN1Q9BXU9 219 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 GDF3Q9NR23 364 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 ANGPTL2Q9UKU9 493 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 COQ6Q9Y2Z9 468 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 HYOU1Q9Y4L1 999 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 CHD5Q8TDI0 1954 aa11.64□□□□□ -0.55
VCAN-212ENST00000515397 NYNRINQ9P2P1 1898 aaKnown RBP11.63□□□□□ -0.55
VCAN-212ENST00000515397 SSU72P8A0A1W2PR75 194 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 A8MX80 341 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 EIF3CLB5ME19 914 aaKnown RBP11.63□□□□□ -0.55
VCAN-212ENST00000515397 PROSCO94903 275 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 THEGLP0DJG4 465 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 AKT2P31751 481 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 CCT8P50990 548 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 SCNN1BP51168 640 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 RAD51Q06609 339 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 SLC10A7Q0GE19 358 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 CCDC15Q0P6D6 951 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 SUZ12Q15022 739 aaKnown RBP11.63□□□□□ -0.55
VCAN-212ENST00000515397 HADHQ16836 314 aaKnown RBP11.63□□□□□ -0.55
VCAN-212ENST00000515397 TMEM259Q4ZIN3 620 aa11.63□□□□□ -0.55
VCAN-212ENST00000515397 ZFYVE27Q5T4F4 411 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms