RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 HADHBP55084 474 aaKnown RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 ADGRE1Q14246 886 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 PLEKHO2Q8TD55 490 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 NDRG1Q92597 394 aaKnown RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 NIFKQ9BYG3 293 aaKnown RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 PDZD7Q9H5P4 517 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 A0A0G2JLL6 359 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 SMIM35A0A1B0GVV1 85 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 MYO1GB0I1T2 1018 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 GPR25O00155 361 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 AREL1O15033 823 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 POLR2EP19388 210 aaKnown RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 TAF5Q15542 800 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 SAMD4BQ5PRF9 694 aaKnown RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 RETSATQ6NUM9 610 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 PRRT2Q7Z6L0 340 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-213ENST00000514442 SLC7A5P2Q9GIP4 190 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 XPNPEP1Q9NQW7 623 aa13.26□□□□□ -0.29
TCOF1-213ENST00000514442 PRKAA1Q13131 559 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 C16orf46Q6P387 395 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 POLNQ7Z5Q5 900 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 LZTR1Q8N653 840 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 LGMNQ99538 433 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 REXO4Q9GZR2 422 aaKnown RBP13.25□□□□□ -0.29
TCOF1-213ENST00000514442 A0A096LPK6 155 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 SMIM28A0A1B0GU29 152 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FAM25AB3EWG3 89 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FAM25CB3EWG5 89 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FAM25GB3EWG6 89 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 DDHD2O94830 711 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 H6PDO95479 791 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 ITGAVP06756 1048 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 SOAT1P35610 550 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 ZNF284Q2VY69 593 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 AGKQ53H12 422 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 LRRC38Q5VT99 294 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 POTEHQ6S545 545 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 CPXM1Q96SM3 734 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 YIPF2Q9BWQ6 316 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 TXLNGYQ9BZA5 131 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 CXorf21Q9HAI6 301 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 STMN3Q9NZ72 180 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 CNTNAP1P78357 1384 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FBP2O00757 339 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 MSCO60682 206 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FKBP9O95302 570 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 GUCA1CO95843 209 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 ICAM3P32942 547 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 ST13P50502 369 aaKnown RBP13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FKBP9P1Q75LS8 142 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FAM35AQ86V20 835 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 BANPQ8N9N5 519 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 FAM162AQ96A26 154 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 TCF12Q99081 682 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 PTPRHQ9HD43 1115 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 PLLPQ9Y342 182 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 ATRNL1Q5VV63 1379 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 MAGEB16A2A368 324 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 C5orf58C9J3I9 102 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 TRIM24O15164 1050 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 TSPAN1O60635 241 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 TRIM13O60858 407 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 BPGMP07738 259 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 BCAP31P51572 246 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 RGS18Q9NS28 235 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 UBA2Q9UBT2 640 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-213ENST00000514442 PNMA8BQ9ULN7 279 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-213ENST00000514442 PLA2G4CQ9UP65 541 aa13.25□□□□□ -0.29
TCOF1-213ENST00000514442 A0A0A0MRY4 1105 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-213ENST00000514442 B4GALT4O60513 344 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 LYPLA1O75608 230 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-213ENST00000514442 CD97P48960 835 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SULT2A1Q06520 285 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SPANXN3Q5MJ09 141 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 PPM1LQ5SGD2 360 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 GLT6D1Q7Z4J2 308 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 KBTBD2Q8IY47 623 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SFRP1Q8N474 314 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 TBC1D19Q8N5T2 526 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 OR7A2PQ8NGA2 310 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 OSCP1Q8WVF1 389 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SPATA13Q96N96 652 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 DEFB118Q96PH6 123 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 TRIM39Q9HCM9 518 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 RBPJLQ9UBG7 517 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 DUOX1Q9NRD9 1551 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SF3B1O75533 1304 aaKnown RBP eCLIP13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SH3PXD2BA1X283 911 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SNPHO15079 494 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 SNAP91O60641 907 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 OR4Q2P0C623 313 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 NFKB1P19838 968 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 HOXD12P35452 270 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 ATP5C1P36542 298 aaKnown RBP13.24□□□□□ -0.29
TCOF1-213ENST00000514442 NPY2RP49146 381 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 FCHO2Q0JRZ9 810 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 PCBP1Q15365 356 aaKnown RBP eCLIP13.24□□□□□ -0.29
TCOF1-213ENST00000514442 GRTP1Q5TC63 336 aa13.24□□□□□ -0.29
TCOF1-213ENST00000514442 KLHL35Q6PF15 583 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms