RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 PAGE2Q7Z2X7 111 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 TMEM110Q86TL2 294 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 MINDY2Q8NBR6 621 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 OR2T34Q8NGX1 318 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 OR2T3Q8NH03 318 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 GATA6Q92908 595 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 PHF21AQ96BD5 680 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 SPATA13Q96N96 652 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 YME1L1Q96TA2 773 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 TXLNGYQ9BZA5 131 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 EPB41L1Q9H4G0 881 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 RIBC2Q9H4K1 309 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 ENTPD7Q9NQZ7 604 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 TMEM161AQ9NX61 479 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 DSEQ9UL01 958 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 DGKBQ9Y6T7 804 aa11.36□□□□□ -0.59
TCOF1-211ENST00000513346 WBP4O75554 376 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ZNF682O95780 498 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 AOC1P19801 751 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ENTPD1P49961 510 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 FAM45BPQ6NSW5 357 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ADHFE1Q8IWW8 467 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 TBC1D21Q8IYX1 336 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 MCFD2Q8NI22 146 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 PNPT1Q8TCS8 783 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 RAB2BQ8WUD1 216 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 FAM120BQ96EK7 910 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ASB7Q9H672 318 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 LATS2Q9NRM7 1088 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 A0A0J9YVX5 310 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 NCAM2O15394 837 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 NRP2O60462 931 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 PLIN3O60664 434 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 VPS4BO75351 444 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 TNFRSF21O75509 655 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 KRT6AP02538 564 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 KRT6BP04259 564 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 MSH3P20585 1137 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ATP5F1P24539 256 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 TKTP29401 623 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 CDKN2BP42772 138 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ARHGAP15Q53QZ3 475 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 C6orf183Q5T699 404 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 NIPAL1Q6NVV3 410 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 KCTD8Q6ZWB6 473 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 DEFB128Q7Z7B8 93 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 KRT73Q86Y46 540 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ASB2Q96Q27 587 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 HIPK3Q9H422 1215 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 MID1IP1Q9NPA3 183 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 EHD3Q9NZN3 535 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 IGSF9Q9P2J2 1179 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 POLG2Q9UHN1 485 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 UBIAD1Q9Y5Z9 338 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ITM2AO43736 263 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 POMCP01189 267 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 URODP06132 367 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 CKMP06732 381 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 HIST1H2AGP0C0S8 130 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 HIST1H2ADP20671 130 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 AKAP5P24588 427 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 KRT20P35900 424 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 PSEN2P49810 448 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 PLK1P53350 603 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 CSE1LP55060 971 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 YWHAZP63104 245 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 CDH18Q13634 790 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 FSCN1Q16658 493 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ZNF280DQ6N043 979 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 MRNIPQ6NTE8 343 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 CPNE8Q86YQ8 564 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 MRPS31Q92665 395 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 HIST1H2AHQ96KK5 128 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 HIST1H2AJQ99878 128 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 H2AFJQ9BTM1 129 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ADI1Q9BV57 179 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 SMPD3Q9NY59 655 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ZNF221Q9UK13 617 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 KLHL20Q9Y2M5 609 aa11.35□□□□□ -0.59
TCOF1-211ENST00000513346 COPG1Q9Y678 874 aaKnown RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ZNF142P52746 1687 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-211ENST00000513346 ALDH2P05091 517 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 DBTP11182 482 aaKnown RBP11.34□□□□□ -0.59
TCOF1-211ENST00000513346 LBPP18428 481 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 MPSTP25325 297 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 SERPINH1P50454 418 aaKnown RBP11.34□□□□□ -0.59
TCOF1-211ENST00000513346 PRMT2P55345 433 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 TIMM50Q3ZCQ8 353 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 BBS7Q8IWZ6 715 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 PGBD3Q8N328 593 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 PLEKHO2Q8TD55 490 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 MIPEPQ99797 713 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 UNC93B1Q9H1C4 597 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 LIN28AQ9H9Z2 209 aaKnown RBP11.34□□□□□ -0.59
TCOF1-211ENST00000513346 FANCEQ9HB96 536 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 TBC1D13Q9NVG8 400 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 SPATA7Q9P0W8 599 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 EGFL7Q9UHF1 273 aa11.34□□□□□ -0.59
TCOF1-211ENST00000513346 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-211ENST00000513346 BOLA2-SMG1P6H3BVE0 249 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms