RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TIFABQ6ZNK6 161 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 LRRC8DQ7L1W4 858 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 HORMAD1Q86X24 394 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM126BQ8IXS8 530 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 GLMNQ92990 594 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FBXO32Q969P5 355 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 HIST1H2AHQ96KK5 128 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 OR52B2Q96RD2 323 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 HIST1H2AJQ99878 128 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 H2AFJQ9BTM1 129 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CCDC106Q9BWC9 280 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 GBA3Q9H227 469 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PIDD1Q9HB75 910 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PLGRKTQ9HBL7 147 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TELO2Q9Y4R8 837 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CNTNAP1P78357 1384 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 NAV1Q8NEY1 1877 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 AMHP03971 560 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 F7P08709 466 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 ADSLP30566 484 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CCNFP41002 786 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 AIF1P55008 147 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TBX4P57082 545 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 MPP1Q00013 466 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 MFSD10Q14728 455 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SOWAHAQ2M3V2 549 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TMEM198Q66K66 360 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 NCBP2-AS2Q69YL0 99 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PDSS2Q86YH6 399 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FSTL5Q8N475 847 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 OR52K2Q8NGK3 314 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 ABHD16BQ9H3Z7 469 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 MINDY3Q9H8M7 445 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 USP29Q9HBJ7 922 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CNGB3Q9NQW8 809 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PTTG2Q9NZH5 202 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SCHIP1Q9P0W5 487 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 IGSF9Q9P2J2 1179 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SIX4Q9UIU6 781 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CNTN6Q9UQ52 1028 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM50BQ9Y247 325 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 MARF1Q9Y4F3 1742 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SMIM28A0A1B0GU29 152 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 F5H5T6 163 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GPR182O15218 404 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 OCM2P0CE71 109 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 OCMP0CE72 109 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 HGFP14210 728 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GCAP28676 217 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SERPINB1P30740 379 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 HARS2P49590 506 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SCNN1BP51168 640 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GALK1P51570 392 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 PPM1LQ5SGD2 360 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 STXBP5Q5T5C0 1151 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ABRAXAS1Q6UWZ7 409 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 TMEM110Q86TL2 294 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 P3H2Q8IVL5 708 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 CLYBLQ8N0X4 340 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 OR56A4Q8NGH8 313 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 TRPM4Q8TD43 1214 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SERPINB11Q96P15 392 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 MAF1Q9H063 256 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 XYLT2Q9H1B5 865 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GLOD4Q9HC38 313 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 OLA1Q9NTK5 396 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 BTRCQ9Y297 605 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 A6NHS1 94 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 BTN3A1O00481 513 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ADCY6O43306 1168 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC2A4P14672 509 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 HOXB8P17481 243 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 LMO2P25791 158 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 FMO4P31512 558 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 THOP1P52888 689 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 CLDN10P78369 228 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 DAB2P98082 770 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 AARS2Q5JTZ9 985 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SNX31Q8N9S9 440 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 METTL6Q8TCB7 284 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 LRTOMTQ8WZ04 291 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 VPS33AQ96AX1 596 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 COLEC11Q9BWP8 271 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 CYTH4Q9UIA0 394 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 VWA7Q9Y334 891 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ADAMTSL3P82987 1691 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 KATNA1O75449 491 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 IPO13O94829 963 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 XRCC1P18887 633 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 S100A5P33763 92 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 THPOP40225 353 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GLUD2P49448 558 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 RAD23AP54725 363 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 WNT3AP56704 352 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 BNIP2Q12982 314 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 TRIM25Q14258 630 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 DMC1Q14565 340 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ZIK1Q3SY52 487 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GPR107Q5VW38 600 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 OLFML1Q6UWY5 402 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms