RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PCDHB1Q9Y5F3 818 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 U3KQA8 63 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 RRP8O43159 456 aaKnown RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 CCP110O43303 1012 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 BUB1O43683 1085 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 OPA1O60313 960 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 TMCC1O94876 653 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 POP4O95707 220 aaKnown RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 CSF2P04141 144 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 CALB1P05937 261 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 ACTN2P35609 894 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 IGFALSP35858 605 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 DUSP3P51452 185 aaPredicted RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 COPB1P53618 953 aaKnown RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 PFN3P60673 137 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 MYLK3Q32MK0 819 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 EFHC2Q5JST6 749 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 LRRC73Q5JTD7 316 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 CDCP2Q5VXM1 449 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 WDR59Q6PJI9 974 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 SLFN11Q7Z7L1 901 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 PYROXD2Q8N2H3 581 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 RTL3Q8N8U3 475 aaKnown RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 NETO2Q8NC67 525 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 C3orf20Q8ND61 904 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 DENND6BQ8NEG7 585 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 NEK11Q8NG66 645 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 ASB12Q8WXK4 309 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 GDAP1L1Q96MZ0 367 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 DUSP23Q9BVJ7 150 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 OSBPL1AQ9BXW6 950 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 KLC2Q9H0B6 622 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 NOL6Q9H6R4 1146 aaKnown RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 SEPT11Q9NVA2 429 aaKnown RBP11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 EVA1BQ9NVM1 165 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 KLF15Q9UIH9 416 aa11.71□□□□□ -0.53
HMGCS1-204ENST00000507293 IGSF10Q6WRI0 2623 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 TCRBV5S1A1TA0A578 114 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 ZSCAN5CA6NGD5 496 aaPredicted RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 LGALS16A8MUM7 142 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 AREL1O15033 823 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 AQP9O43315 295 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 CSO75390 466 aaKnown RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 IGSF6O95976 241 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 GP1BAP07359 652 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 JUNDP17535 347 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 EPHB2P29323 1055 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 RHOAP61586 193 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 EIF2B5Q13144 721 aaKnown RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 DEFB133Q30KQ1 61 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 TBC1D25Q3MII6 688 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 ZCCHC8Q6NZY4 707 aaKnown RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 DNAJC24Q6P3W2 148 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 SCYL2Q6P3W7 929 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 GDPD4Q6W3E5 623 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 RBM43Q6ZSC3 357 aaKnown RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 MON1BQ7L1V2 547 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 VPS36Q86VN1 386 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 RBFAQ8N0V3 343 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 IFI44Q8TCB0 444 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 MAPK15Q8TD08 544 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 LMX1AQ8TE12 382 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 FGF11Q92914 225 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 ARHGEF26Q96DR7 871 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 HMCESQ96FZ2 354 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 MCEEQ96PE7 176 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 DEPDC7Q96QD5 511 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 UBL7Q96S82 380 aaPredicted RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 PRORYQ9H606 182 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 USP29Q9HBJ7 922 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 LIMA1Q9UHB6 759 aaKnown RBP11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 RAI2Q9Y5P3 530 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 CSNK1G3Q9Y6M4 447 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 NBEAQ8NFP9 2946 aa11.7□□□□□ -0.54
HMGCS1-204ENST00000507293 CPED1A4D0V7 1026 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 SIGLEC16A6NMB1 481 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 EIF4E1BA6NMX2 242 aaKnown RBP11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 RASA4BC9J798 803 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 RASA4O43374 803 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CREB3O43889 395 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 MMP20O60882 483 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 MPOP05164 745 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 ITIH2P19823 946 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 ZNF143P52747 638 aaPredicted RBP11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 THOP1P52888 689 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 GABREP78334 506 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 MYL5Q02045 173 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 RAD51Q06609 339 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 C1QBPQ07021 282 aaKnown RBP11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CCDC173Q0VFZ6 552 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CDKN3Q16667 212 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 GUSBP11Q6P575 273 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CLEC17AQ6ZS10 378 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 EFL1Q7Z2Z2 1120 aaKnown RBP11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 TTC7BQ86TV6 843 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 ANKRD20A12PQ8NF67 263 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CXorf40AQ8TE69 158 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CASKIN2Q8WXE0 1202 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 CENPTQ96BT3 561 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 EXOC2Q96KP1 924 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms