RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CLCNKBP51801 687 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 HK2P52789 917 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PRKAA1Q13131 559 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MED21Q13503 144 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SLC12A1Q13621 1099 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PCID2Q5JVF3 399 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TSTD2Q5T7W7 516 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TMEM198Q66K66 360 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DENND5AQ6IQ26 1287 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LRRC8EQ6NSJ5 796 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LINC00523Q86TU6 105 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CEP97Q8IW35 865 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DENND6AQ8IWF6 608 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TMEM86AQ8N2M4 240 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RP9Q8TA86 221 aaKnown RBP16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 STON2Q8WXE9 905 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SCYL1Q96KG9 808 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AP3B1O00203 1094 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PSMD3O43242 534 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MT-CYBP00156 380 aaPredicted RBP16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DNAJB2P25686 324 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARNTP27540 789 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARCN1P48444 511 aaKnown RBP16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MPP1Q00013 466 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GRM2Q14416 872 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF460Q14592 562 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF423Q2M1K9 1284 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LRRC23Q53EV4 343 aaPredicted RBP16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LCA5Q86VQ0 697 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARHGAP12Q8IWW6 846 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 KYQ8NBH2 561 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RTP3Q9BQQ7 232 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CSNK1G1Q9HCP0 422 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 VPS28Q9UK41 221 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CDH9Q9ULB4 789 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PSMD13Q9UNM6 376 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 BPTFQ12830 3046 aa16.28■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SLC22A2O15244 555 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 COL6A2P12110 1019 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PPARGP37231 505 aaPredicted RBP16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 THOP1P52888 689 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PURAQ00577 322 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF33AQ06730 810 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CTBP1Q13363 440 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PIGGQ5H8A4 983 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARTNQ5T4W7 220 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 FBXL19Q6PCT2 694 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 C16orf89Q6UX73 402 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DIS3LQ8TF46 1054 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NXNL1Q96CM4 212 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RCN3Q96D15 328 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CATSPER2Q96P56 530 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CDRT15Q96T59 188 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TBL1YQ9BQ87 522 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 FTHL17Q9BXU8 183 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 XPR1Q9UBH6 696 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 VTI1BQ9UEU0 232 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF232Q9UNY5 417 aa16.27■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DNAJB1P25685 340 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GRIA2P42262 883 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DPP6P42658 865 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ALDH1A3P47895 512 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RPL26P61254 145 aaKnown RBP16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 EIF4EBP2Q13542 120 aaPredicted RBP16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CYLC2Q14093 348 aaPredicted RBP16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ESRP1Q6NXG1 681 aaKnown RBP16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PQLC1Q8N2U9 271 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 KDM1BQ8NB78 822 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DQX1Q8TE96 717 aaKnown RBP16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SMARCD1Q96GM5 515 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FCRL5Q96RD9 977 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GAD1Q99259 594 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MCOLN1Q9GZU1 580 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 OSBPL2Q9H1P3 480 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 INPP5FQ9Y2H2 1132 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ACOT9Q9Y305 439 aa16.27■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 VAPBO95292 243 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 XRCC1P18887 633 aaPredicted RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CCNCP24863 283 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ADSLP30566 484 aaPredicted RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ATN1P54259 1190 aaPredicted RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 POLE2P56282 527 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RAB10P61026 200 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 COG7P83436 770 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CEACAM7Q14002 265 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 POU6F1Q14863 301 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 LIN52Q52LA3 116 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FBXO46Q6PJ61 603 aaPredicted RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SPATA6LQ8N4H0 392 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 IRGQQ8WZA9 623 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MYLPFQ96A32 169 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TSNARE1Q96NA8 513 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 BTBD9Q96Q07 612 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 IL12RB2Q99665 862 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PAAF1Q9BRP4 392 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SLC38A7Q9NVC3 462 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SLC2A6Q9UGQ3 507 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CDYLQ9Y232 598 aa16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 AAR2Q9Y312 384 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FAM95CA0A1B0GW59 222 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms