RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CAMKK1Q8N5S9 505 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 KIF18AQ8NI77 898 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 TEKT5Q96M29 485 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 NUDCD1Q96RS6 583 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 FBRSQ9HAH7 460 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 GLOD4Q9HC38 313 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 PRMT8Q9NR22 394 aaPredicted RBP12.05□□□□□ -0.48
CUX1-210ENST00000497815 RSPH14Q9UHP6 348 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 PPM1HQ9ULR3 514 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 ATG2BQ96BY7 2078 aa12.05□□□□□ -0.48
CUX1-210ENST00000497815 CFAP69A5D8W1 941 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 PHF2O75151 1096 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 PAPSS2O95340 614 aaPredicted RBP12.04□□□□□ -0.48
CUX1-210ENST00000497815 ADH1BP00325 375 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ITGAVP06756 1048 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 CR2P20023 1033 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 CD68P34810 354 aaPredicted RBP12.04□□□□□ -0.48
CUX1-210ENST00000497815 CD86P42081 329 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 CSNK1DP48730 415 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 FNTBP49356 437 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 BCL2L1Q07817 233 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ANGPT1Q15389 498 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ANKRD20A2Q5SQ80 823 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 CFAP58Q5T655 872 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ANKRD20A1Q5TYW2 823 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ANKRD20A3Q5VUR7 823 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 FAM46CQ5VWP2 391 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 NCEH1Q6PIU2 408 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 GDPD4Q6W3E5 623 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ARHGEF18Q6ZSZ5 1173 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 FAM124AQ86V42 546 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 KLHL7Q8IXQ5 586 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 CCDC89Q8N998 374 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 TMIEQ8NEW7 156 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 SPATA22Q8NHS9 363 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 ARRDC2Q8TBH0 407 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 PDCD6IPQ8WUM4 868 aaKnown RBP12.04□□□□□ -0.48
CUX1-210ENST00000497815 NSMCE3Q96MG7 304 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 KLHL32Q96NJ5 620 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 RBM15Q96T37 977 aaKnown RBP eCLIP12.04□□□□□ -0.48
CUX1-210ENST00000497815 VAT1Q99536 393 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 PABPC3Q9H361 631 aaKnown RBP12.04□□□□□ -0.48
CUX1-210ENST00000497815 ATP13A3Q9H7F0 1226 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 CD93Q9NPY3 652 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 UBP1Q9NZI7 540 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 RNF14Q9UBS8 474 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 AMACRQ9UHK6 382 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 TRHDEQ9UKU6 1024 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 INVSQ9Y283 1065 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 PCDHGC4Q9Y5F7 938 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 SHROOM3Q8TF72 1996 aa12.04□□□□□ -0.48
CUX1-210ENST00000497815 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 A0A1W2PP55 124 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 C5orf60A6NFR6 353 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 AXIN1O15169 862 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 GALR2O43603 387 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 RNASEH2AO75792 299 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 ZNF189O75820 626 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 ZSCAN5DPP0CG00 497 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 ETS1P14921 441 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 C5AR1P21730 350 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 SERPINA4P29622 427 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 STIP1P31948 543 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 COILP38432 576 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 MAPK8P45983 427 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 IHHQ14623 411 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 TRIP13Q15645 432 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 PCSK7Q16549 785 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 CYP1B1Q16678 543 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 TTC31Q49AM3 519 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 ITPRIPL1Q6GPH6 555 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 DRICH1Q6PGQ1 229 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 CCDC137Q6PK04 289 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 KDELC2Q7Z4H8 507 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 RASSF3Q86WH2 238 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 HDDC3Q8N4P3 179 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 AADATQ8N5Z0 425 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 C12orf50Q8NA57 414 aaPredicted RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 GLIS1Q8NBF1 620 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 RLN3Q8WXF3 142 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 VOPP1Q96AW1 172 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 ARRDC3Q96B67 414 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 IMP4Q96G21 291 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 LRIG1Q96JA1 1093 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 SPATA13Q96N96 652 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 TUBGCP5Q96RT8 1024 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 OMDQ99983 421 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 OSBPL1AQ9BXW6 950 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 CPEB1Q9BZB8 566 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 DDX47Q9H0S4 455 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 GBA3Q9H227 469 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 DYRK4Q9NR20 520 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 SERGEFQ9UGK8 458 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 EBF1Q9UH73 591 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 CDC23Q9UJX2 597 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 CYP8B1Q9UNU6 501 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 DRG1Q9Y295 367 aaKnown RBP12.03□□□□□ -0.48
CUX1-210ENST00000497815 KMT2EQ8IZD2 1858 aa12.03□□□□□ -0.48
CUX1-210ENST00000497815 ZNF500O60304 480 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms