RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 NEMP2A6NFY4 417 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 EEF2KO00418 725 aaKnown RBP12.92□□□□□ -0.34
PTPRF-214ENST00000496043 DDX3XO00571 662 aaKnown RBP eCLIP12.92□□□□□ -0.348e-13■■■■□ 21.3
PTPRF-214ENST00000496043 FPGTO14772 594 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 PRPSAP2O60256 369 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 SDC3O75056 442 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 SKILP12757 684 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 RABIFP47224 123 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 ZNF211Q13398 564 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-214ENST00000496043 ILKQ13418 452 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 FGL2Q14314 439 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 FIGNQ5HY92 759 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 PROSER1Q86XN7 944 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 MARCH9Q86YJ5 346 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 HCAR2Q8TDS4 363 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 TRIM11Q96F44 468 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 FUCA2Q9BTY2 467 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 CPEB1Q9BZB8 566 aaKnown RBP12.92□□□□□ -0.34
PTPRF-214ENST00000496043 MRPL47Q9HD33 250 aaKnown RBP12.92□□□□□ -0.34
PTPRF-214ENST00000496043 GPATCH2LQ9NWQ4 482 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 UBA2Q9UBT2 640 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-214ENST00000496043 AP4E1Q9UPM8 1137 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 SCINQ9Y6U3 715 aa12.92□□□□□ -0.34
PTPRF-214ENST00000496043 USP24Q9UPU5 2620 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 FAM149AA5PLN7 773 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 POM121BA6NF01 834 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 ARHGAP42A6NI28 874 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 TRIM38O00635 465 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 RAD51BO15315 384 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 SIGLEC6O43699 453 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 MYBL1P10243 752 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 TIMP2P16035 220 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 XPAP23025 273 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 HNF1BP35680 557 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 ABL2P42684 1182 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 ACADVLP49748 655 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 PAPOLAP51003 745 aaKnown RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 SUOXP51687 545 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 HNRNPKP61978 463 aaKnown RBP eCLIP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 E2F1Q01094 437 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 CAMK2BQ13554 666 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 GRM3Q14832 879 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 KYAT3Q6YP21 454 aaKnown RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 PTAR1Q7Z6K3 402 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 DNAAF5Q86Y56 855 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 PSTKQ8IV42 348 aaKnown RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 ARFGAP1Q8N6T3 406 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 NETO2Q8NC67 525 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 MDM1Q8TC05 714 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 FNIP1Q8TF40 1166 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 VOPP1Q96AW1 172 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 ZNF653Q96CK0 615 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 SLC39A8Q9C0K1 460 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 ISCUQ9H1K1 167 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 LRRC19Q9H756 370 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 CBX8Q9HC52 389 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 UCKL1Q9NWZ5 548 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 DNAJC28Q9NX36 388 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 MYO1AQ9UBC5 1043 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 DKK3Q9UBP4 350 aa12.91□□□□□ -0.34
PTPRF-214ENST00000496043 BZW2Q9Y6E2 419 aaKnown RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 NYNRINQ9P2P1 1898 aaKnown RBP12.91□□□□□ -0.34
PTPRF-214ENST00000496043 SPTY2D1-AS1A0A0U1RR47 76 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 J3KR12 359 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 AREL1O15033 823 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ATMINO43313 823 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 PRAMEF11O60813 436 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 MMP20O60882 483 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 PIAS2O75928 621 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 TM7SF2O76062 418 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ALPPL2P10696 532 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ERCC2P18074 760 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ACP1P24666 158 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 MIPP30301 263 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 HCAR3P49019 387 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ZNF135P52742 658 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 UBASH3AP57075 661 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 DAB2P98082 770 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 FANCCQ00597 558 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 CYP4F3Q08477 520 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ACAP1Q15027 740 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 CA9Q16790 459 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 KLHL40Q2TBA0 621 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 PROX2Q3B8N5 592 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ZNF542PQ5EBM4 170 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 E4F1Q66K89 784 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 RFX8Q6ZV50 586 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 SLC22A18ASQ8N1D0 253 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 DENND6BQ8NEG7 585 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 OR4C6Q8NH72 309 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 CXorf40AQ8TE69 158 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 SYN2Q92777 582 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 CENPTQ96BT3 561 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 CELF6Q96J87 481 aaKnown RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 KCTD15Q96SI1 283 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 KLF6Q99612 283 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 SNRNP25Q9BV90 132 aaKnown RBP12.9□□□□□ -0.34
PTPRF-214ENST00000496043 C1QTNF7Q9BXJ2 289 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 SUV39H2Q9H5I1 410 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms