RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 NPIPB5A8MRT5 1133 aa4□□□□□ -1.77
VPS50-219ENST00000495039 NPIPB4C9JG80 1138 aa4□□□□□ -1.77
VPS50-219ENST00000495039 CHL1O00533 1208 aa4□□□□□ -1.77
VPS50-219ENST00000495039 ATP1A1P05023 1023 aaKnown RBP4□□□□□ -1.77
VPS50-219ENST00000495039 YWHAQP27348 245 aa4□□□□□ -1.77
VPS50-219ENST00000495039 DCTDP32321 178 aa4□□□□□ -1.77
VPS50-219ENST00000495039 KRT2P35908 639 aa4□□□□□ -1.77
VPS50-219ENST00000495039 ECT2LQ008S8 904 aa4□□□□□ -1.77
VPS50-219ENST00000495039 PMP22Q01453 160 aa4□□□□□ -1.77
VPS50-219ENST00000495039 STARD3Q14849 445 aa4□□□□□ -1.77
VPS50-219ENST00000495039 BTBD16Q32M84 506 aa4□□□□□ -1.77
VPS50-219ENST00000495039 TRIM60Q495X7 471 aa4□□□□□ -1.77
VPS50-219ENST00000495039 DCAF6Q58WW2 860 aa4□□□□□ -1.77
VPS50-219ENST00000495039 GATAD2AQ86YP4 633 aa4□□□□□ -1.77
VPS50-219ENST00000495039 MYLK4Q86YV6 388 aaPredicted RBP4□□□□□ -1.77
VPS50-219ENST00000495039 VPS37AQ8NEZ2 397 aa4□□□□□ -1.77
VPS50-219ENST00000495039 TBC1D22AQ8WUA7 517 aa4□□□□□ -1.77
VPS50-219ENST00000495039 KCNJ9Q92806 393 aa4□□□□□ -1.77
VPS50-219ENST00000495039 TMEM41AQ96HV5 264 aa4□□□□□ -1.77
VPS50-219ENST00000495039 STK33Q9BYT3 514 aa4□□□□□ -1.77
VPS50-219ENST00000495039 SMARCAL1Q9NZC9 954 aa4□□□□□ -1.77
VPS50-219ENST00000495039 LRFN1Q9P244 771 aa4□□□□□ -1.77
VPS50-219ENST00000495039 TAGLN3Q9UI15 199 aa4□□□□□ -1.77
VPS50-219ENST00000495039 SLC39A10Q9ULF5 831 aa4□□□□□ -1.77
VPS50-219ENST00000495039 SMAD5-AS1Q9Y6J3 95 aa4□□□□□ -1.77
VPS50-219ENST00000495039 F5H423 210 aaPredicted RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 FFAR2O15552 330 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 HEXIM1O94992 359 aaKnown RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 VNN2O95498 520 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 LDHAP00338 332 aaKnown RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 AMBPP02760 352 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 CETPP11597 493 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 SSTR2P30874 369 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 SKIV2L2P42285 1042 aaKnown RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 NOVP48745 357 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 TNFAIP2Q03169 654 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 CHAF1AQ13111 956 aaPredicted RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 FAM69BQ5VUD6 431 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 TBC1D9BQ66K14 1250 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 PGBD2Q6P3X8 592 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 SCN4BQ8IWT1 228 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 AADATQ8N5Z0 425 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 ZNF441Q8N8Z8 693 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 ZNF527Q8NB42 609 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 STT3BQ8TCJ2 826 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 SLC2A12Q8TD20 617 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 RSC1A1Q92681 617 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 MUL1Q969V5 352 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 MMTAG2Q9BU76 263 aaKnown RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 WDR12Q9GZL7 423 aaKnown RBP3.99□□□□□ -1.77
VPS50-219ENST00000495039 ZNF696Q9H7X3 374 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 ZFP57Q9NU63 452 aa3.99□□□□□ -1.77
VPS50-219ENST00000495039 FAM90A18PA6NE21 464 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 FAM90A16PA6NEW6 464 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 FAM90A9PA6NNJ1 464 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 FAM90A5PA8MXJ8 464 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 FAM90A15PP0C7V4 464 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 FAM90A14PP0C7W9 464 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 HOXC13P31276 330 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 LIFRP42702 1097 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 ZBTB17Q13105 803 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 C10orf62Q5T681 223 aaPredicted RBP3.98□□□□□ -1.77
VPS50-219ENST00000495039 GGT6Q6P531 493 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 C19orf48Q6RUI8 117 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 SLC26A9Q7LBE3 791 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 GALNT7Q86SF2 657 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 EPHX4Q8IUS5 362 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 ENAHQ8N8S7 591 aaPredicted RBP3.98□□□□□ -1.77
VPS50-219ENST00000495039 SCAIQ8N9R8 606 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 KBTBD3Q8NAB2 608 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 TRIB2Q92519 343 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 ANKRD9Q96BM1 317 aaPredicted RBP3.98□□□□□ -1.77
VPS50-219ENST00000495039 C18orf8Q96DM3 657 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 RBM4Q9BWF3 364 aaKnown RBP3.98□□□□□ -1.77
VPS50-219ENST00000495039 KRTAP4-3Q9BYR4 195 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 UPB1Q9UBR1 384 aa3.98□□□□□ -1.77
VPS50-219ENST00000495039 A0A087WV62 115 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 GOLGA6L3A6NEY3 463 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 EFCAB8A8MWE9 144 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 ASNA1O43681 348 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 KDM4BO94953 1096 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 DHRS4L1P0CG22 281 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 MYF6P23409 242 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 CDK7P50613 346 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 FAM27E3Q08E93 113 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 SLC1A5Q15758 541 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 SYT16Q17RD7 645 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 SFR1Q86XK3 245 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 KRTAP7-1Q8IUC3 87 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 POF1BQ8WVV4 589 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 PIGSQ96S52 555 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 CRB3Q9BUF7 120 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 BARHL1Q9BZE3 327 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 DDX43Q9NXZ2 648 aaKnown RBP3.97□□□□□ -1.77
VPS50-219ENST00000495039 ZNF224Q9NZL3 707 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 DHDHQ9UQ10 334 aa3.97□□□□□ -1.77
VPS50-219ENST00000495039 MORC2Q9Y6X9 1032 aaPredicted RBP3.97□□□□□ -1.77
VPS50-219ENST00000495039 SYN3O14994 580 aa3.96□□□□□ -1.78
VPS50-219ENST00000495039 SKAP2O75563 359 aaPredicted RBP3.96□□□□□ -1.78
VPS50-219ENST00000495039 CYP4B1P13584 511 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms