RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 CFAP58Q5T655 872 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 NCBP2-AS2Q69YL0 99 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 PARS2Q7L3T8 475 aaKnown RBP16.15■□□□□ 0.18
LIME1-209ENST00000494776 DAAM2Q86T65 1068 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 LRRC49Q8IUZ0 686 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 TSEN2Q8NCE0 465 aaKnown RBP16.15■□□□□ 0.18
LIME1-209ENST00000494776 SERAC1Q96JX3 654 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 CALR3Q96L12 384 aaKnown RBP16.15■□□□□ 0.18
LIME1-209ENST00000494776 RTKNQ9BST9 563 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 CPEB1Q9BZB8 566 aaKnown RBP16.15■□□□□ 0.18
LIME1-209ENST00000494776 TM9SF3Q9HD45 589 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 NUMA1Q14980 2115 aa16.15■□□□□ 0.18
LIME1-209ENST00000494776 RCCD1A6NED2 376 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 INSIG1O15503 277 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 MFSD11O43934 449 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 MAFKO60675 156 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 NEBLO76041 1014 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 NUDT1P36639 197 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 VAV2P52735 878 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 C21orf59P57076 290 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 TAS2R38P59533 333 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 RACK1P63244 317 aaKnown RBP16.14■□□□□ 0.17
LIME1-209ENST00000494776 SLC10A7Q0GE19 358 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 GRIK2Q13002 908 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 SETMARQ53H47 684 aaPredicted RBP16.14■□□□□ 0.17
LIME1-209ENST00000494776 SLC45A4Q5BKX6 768 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 NEK5Q6P3R8 708 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 SRLQ86TD4 932 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 TTC7BQ86TV6 843 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 TRIM69Q86WT6 500 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 TMEM139Q8IV31 216 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 C1orf216Q8TAB5 229 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 RAB7BQ96AH8 199 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 SKA1Q96BD8 255 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 RNF25Q96BH1 459 aaPredicted RBP16.14■□□□□ 0.17
LIME1-209ENST00000494776 FAF2Q96CS3 445 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 FEM1CQ96JP0 617 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 ZNF830Q96NB3 372 aaPredicted RBP16.14■□□□□ 0.17
LIME1-209ENST00000494776 RNF157Q96PX1 679 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 ZDHHC5Q9C0B5 715 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 GOLPH3Q9H4A6 298 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.14■□□□□ 0.17
LIME1-209ENST00000494776 CEP250Q9BV73 2442 aa16.14■□□□□ 0.17
LIME1-209ENST00000494776 A0A1B0GVT2 93 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 A0A1W2PQU0 124 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 ZNF487B1APH4 448 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 CDX4O14627 284 aaPredicted RBP16.13■□□□□ 0.17
LIME1-209ENST00000494776 PSTPIP1O43586 416 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 MAP3K6O95382 1288 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 PIGNO95427 931 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 MX2P20592 715 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 GARSP41250 739 aaKnown RBP16.13■□□□□ 0.17
LIME1-209ENST00000494776 GRIA4P48058 902 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 CSNK1DP48730 415 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 SCNN1BP51168 640 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 NSUN2Q08J23 767 aaKnown RBP eCLIP16.13■□□□□ 0.17
LIME1-209ENST00000494776 IFI16Q16666 785 aaKnown RBP16.13■□□□□ 0.17
LIME1-209ENST00000494776 MARC1Q5VT66 337 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 TIGD7Q6NT04 549 aaPredicted RBP16.13■□□□□ 0.17
LIME1-209ENST00000494776 C11orf63Q6NUN7 778 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 RFX6Q8HWS3 928 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 MINDY1Q8N5J2 469 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 PQLC3Q8N755 202 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 TPCN2Q8NHX9 752 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 KLK6Q92876 244 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 SLC6A18Q96N87 628 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 TUBGCP5Q96RT8 1024 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 ATP13A3Q9H7F0 1226 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 EBF2Q9HAK2 575 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 DLL3Q9NYJ7 618 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 REXO2Q9Y3B8 237 aaKnown RBP16.13■□□□□ 0.17
LIME1-209ENST00000494776 SLCO1B1Q9Y6L6 691 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 DUSP10Q9Y6W6 482 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 GON4LQ3T8J9 2241 aa16.13■□□□□ 0.17
LIME1-209ENST00000494776 BTNL10A8MVZ5 291 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 APOL1O14791 398 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 SLC31A1O15431 190 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 LATO43561 262 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 AP1G1O43747 822 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 OPHN1O60890 802 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 ZFXP17010 805 aaPredicted RBP16.12■□□□□ 0.17
LIME1-209ENST00000494776 CD38P28907 300 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 SERPINA4P29622 427 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 HSPA9P38646 679 aaKnown RBP16.12■□□□□ 0.17
LIME1-209ENST00000494776 MMP13P45452 471 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 RGRP47804 291 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 RPS21P63220 83 aaKnown RBP16.12■□□□□ 0.17
LIME1-209ENST00000494776 BCL2L1Q07817 233 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 ITKQ08881 620 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 GALNT2Q10471 571 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 KIF5AQ12840 1032 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 STAT4Q14765 748 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 NAPEPLDQ6IQ20 393 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 IL27RAQ6UWB1 636 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 HORMAD1Q86X24 394 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 VSIG1Q86XK7 387 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 CCNYQ8ND76 341 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 ZNF641Q96N77 438 aaPredicted RBP16.12■□□□□ 0.17
LIME1-209ENST00000494776 PSKH2Q96QS6 385 aa16.12■□□□□ 0.17
LIME1-209ENST00000494776 ORAI3Q9BRQ5 295 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms