RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PERM1Q5SV97 790 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RNASEH2BQ5TBB1 312 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 EGFLAMQ63HQ2 1017 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 UTS2BQ765I0 119 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BORCS5Q969J3 196 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ADNPQ9H2P0 1102 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CERS4Q9HA82 394 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 COL1A2P08123 1366 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PMM2O15305 246 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TM7SF2O76062 418 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GJA1P17302 382 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FDFT1P37268 417 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 VEPH1Q14D04 833 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SIX1Q15475 284 aaPredicted RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DLG2Q15700 870 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TRNP1Q6NT89 227 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 C17orf99Q6UX52 265 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DENND1CQ8IV53 801 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SPNS2Q8IVW8 549 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TRPV1Q8NER1 839 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SMOQ99835 787 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HIPK3Q9H422 1215 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GNEQ9Y223 722 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SYCE1LA8MT33 242 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 H0Y626 953 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TAF4O00268 1085 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NDUFB5O43674 189 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PROZP22891 400 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HARS2P49590 506 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF132P52740 706 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LAYNQ6UX15 382 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SCAIQ8N9R8 606 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AAASQ9NRG9 546 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF358Q9NW07 568 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 IPO11Q9UI26 975 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CARD8Q9Y2G2 431 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DNAJC16Q9Y2G8 782 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LAMA2P24043 3122 aaKnown RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CXorf49A8MYA2 514 aaPredicted RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 M0R3G1 203 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TPST1O60507 370 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PABPC4LP0CB38 370 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MYL4P12829 197 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 POU5F1Q01860 360 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAPK11Q15759 364 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 N4BP2L1Q5TBK1 243 aaPredicted RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TTC39BQ5VTQ0 682 aaPredicted RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LINGO4Q6UY18 593 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 UNC5AQ6ZN44 842 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC26A9Q7LBE3 791 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AMIGO2Q86SJ2 522 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TTC7BQ86TV6 843 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ADCK1Q86TW2 530 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HPS1Q92902 700 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GPATCH1Q9BRR8 931 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAN1C1Q9NR34 630 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ARIH1Q9Y4X5 557 aaPredicted RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMEM247A6NEH6 219 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AP3B1O00203 1094 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LYPLA1O75608 230 aaPredicted RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 APOA1P02647 267 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 L1CAMP32004 1257 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HADHBP55084 474 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 IL1RL1Q01638 556 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF470Q6ECI4 717 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAMDC4Q6UXC1 1216 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZBTB49Q6ZSB9 765 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RBM23Q86U06 439 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TTC30BQ8N4P2 665 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KBTBD7Q8WVZ9 684 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZFYVE19Q96K21 471 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DACH2Q96NX9 599 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CATSPERBQ9H7T0 1116 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MRPL40Q9NQ50 206 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CREBZFQ9NS37 354 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GKN1Q9NS71 199 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CDH9Q9ULB4 789 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PRELID1Q9Y255 219 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAGEC1O60732 1142 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MFN2O95140 757 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PRKCGP05129 697 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CD86P42081 329 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 XIAPP98170 497 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BFSP2Q13515 415 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MPP2Q14168 576 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CSHL1Q14406 222 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAPRE1Q15691 268 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ARHGAP36Q6ZRI8 547 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC24A5Q71RS6 500 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NUP93Q8N1F7 819 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SMYD1Q8NB12 490 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 C10orf82Q8WW14 230 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PBXIP1Q96AQ6 731 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BPIFA1Q9NP55 256 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KCNK4Q9NYG8 393 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PTCH2Q9Y6C5 1203 aa10.86□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 A0A0A0MRY4 1105 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 E9PBE3 544 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TLR5O60602 858 aa10.85□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KLHL41O60662 606 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms