RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 SSX2IPQ9Y2D8 614 aa12.59□□□□□ -0.39
HMGN1-220ENST00000492280 FNDC3AQ9Y2H6 1198 aaKnown RBP12.59□□□□□ -0.39
HMGN1-220ENST00000492280 AAR2Q9Y312 384 aaKnown RBP12.59□□□□□ -0.39
HMGN1-220ENST00000492280 CFLARO15519 480 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 UBTFL6P0CB48 400 aaPredicted RBP12.58□□□□□ -0.4
HMGN1-220ENST00000492280 COX4I1P13073 169 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 STMN1P16949 149 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 ADRA1AP35348 466 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 NUDT2P50583 147 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 PKNOX1P55347 436 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 FCGRTP55899 365 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 TBL3Q12788 808 aaKnown RBP12.58□□□□□ -0.4
HMGN1-220ENST00000492280 KLF10Q13118 480 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 TSNAXIP1Q2TAA8 658 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 DNAL1Q4LDG9 190 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 MS4A13Q5J8X5 152 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 VARS2Q5ST30 1063 aaKnown RBP12.58□□□□□ -0.4
HMGN1-220ENST00000492280 GLB1LQ6UWU2 654 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 MAB21L3Q8N8X9 362 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 OR6P1Q8NGX9 317 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 GIPC2Q8TF65 315 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 GPR62Q9BZJ7 368 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 CCSER2Q9H7U1 834 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 PRDM16Q9HAZ2 1276 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 MARCH4Q9P2E8 410 aaPredicted RBP12.58□□□□□ -0.4
HMGN1-220ENST00000492280 CDH22Q9UJ99 828 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 CRYL1Q9Y2S2 319 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 RAD54BQ9Y620 910 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 PEX11BO96011 259 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 CKBP12277 381 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 RAB27AP51159 221 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 TBX4P57082 545 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 RAB10P61026 200 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 IRF5Q13568 498 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 GALNT3Q14435 633 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 TRIM71Q2Q1W2 868 aaKnown RBP12.58□□□□□ -0.4
HMGN1-220ENST00000492280 FAM171A1Q5VUB5 890 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 LIPMQ5VYY2 423 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 LINC00523Q86TU6 105 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 PGBD5Q8N414 524 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 FAM156AQ8NDB6 213 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 ANKRD49Q8WVL7 239 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 TSNARE1Q96NA8 513 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 GPR78Q96P69 363 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 HAPLN3Q96S86 360 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 PPP1R12CQ9BZL4 782 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 POMKQ9H5K3 350 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 SP110Q9HB58 689 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 FBXO5Q9UKT4 447 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 ACOT9Q9Y305 439 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 CDY1Q9Y6F8 540 aa12.58□□□□□ -0.4
HMGN1-220ENST00000492280 KCNU1A8MYU2 1149 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 MUSKO15146 869 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 GRID2O43424 1007 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 ANXA9O76027 345 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 CPB1P15086 417 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 TCN1P20061 433 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 INHBEP58166 350 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 SLC12A1Q13621 1099 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 CCNIQ14094 377 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 MGAT5BQ3V5L5 792 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 BRMS1LQ5PSV4 323 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 SH2D4BQ5SQS7 431 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 C10orf120Q5SQS8 335 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 FBXL22Q6P050 247 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 ZYG11AQ6WRX3 759 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 NET1Q7Z628 596 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 SPDL1Q96EA4 605 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 SLC45A3Q96JT2 553 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 TSGA13Q96PP4 275 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 UPF3AQ9H1J1 476 aaKnown RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 UXTQ9UBK9 157 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 EME2A4GXA9 379 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 DPPA5A6NC42 116 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 CA12O43570 354 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 KPNA6O60684 536 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 SMNDC1O75940 238 aaKnown RBP eCLIP12.57□□□□□ -0.44e-7■■■■□ 21.6
HMGN1-220ENST00000492280 LMNAP02545 664 aaKnown RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 FAM163BP0C2L3 166 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 ALOX15P16050 662 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 RPL17P18621 184 aaKnown RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 TFEBP19484 476 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 PEX19P40855 299 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 CD151P48509 253 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 KCNQ1P51787 676 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 MLLT6P55198 1093 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 TAF10Q12962 218 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 BLMHQ13867 455 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 TRMT5Q32P41 509 aaKnown RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 CTXN3Q4LDR2 81 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 RASIP1Q5U651 963 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 SEL1L3Q68CR1 1132 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 CCSAPQ6IQ19 270 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 NEPROQ6NW34 567 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 RANBP10Q6VN20 620 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 MYLK4Q86YV6 388 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 RYBPQ8N488 228 aaPredicted RBP12.57□□□□□ -0.4
HMGN1-220ENST00000492280 BLOC1S5Q8TDH9 187 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 NAT14Q8WUY8 206 aa12.57□□□□□ -0.4
HMGN1-220ENST00000492280 FBXO32Q969P5 355 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms