RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CCR5P51681 352 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TAS2R38P59533 333 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 DYNLT1P63172 113 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NSUN2Q08J23 767 aaKnown RBP eCLIP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SLC10A2Q12908 348 aaPredicted RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TFDP2Q14188 446 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 DUOXA1Q1HG43 343 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TRIM61Q5EBN2 209 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MARC1Q5VT66 337 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3GQ6DHY5 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3CQ6IPX1 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TCEAL6Q6IPX3 200 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 FBXL19Q6PCT2 694 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SRLQ86TD4 932 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NT5DC3Q86UY8 548 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCDC50Q8IVM0 306 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3Q8IZP1 549 aaPredicted RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SYCE1Q8N0S2 351 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 EXD1Q8NHP7 514 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ANP32BQ92688 251 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TCEAL3Q969E4 200 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 HDAC11Q96DB2 347 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TSGA13Q96PP4 275 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TUBGCP5Q96RT8 1024 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 EIF2B4Q9UI10 523 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 AMFRQ9UKV5 643 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TPX2Q9ULW0 747 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PCDHA3Q9Y5H8 950 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 HEY1Q9Y5J3 304 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 A0A1B0GTW7 788 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 C16orf96A6NNT2 1141 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 C10orf142B7Z368 130 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MUSKO15146 869 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PIGNO95427 931 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CFIP05156 583 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCDC175P0C221 793 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KRT10P13645 584 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCNCP24863 283 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CD27P26842 260 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MMP13P45452 471 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PPP2CBP62714 309 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PPP2CAP67775 309 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 LMNB2Q03252 620 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PPP2R5EQ16537 467 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 AASDHQ4L235 1098 aaPredicted RBP16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TFDP3Q5H9I0 405 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KAZNQ674X7 775 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NPNTQ6UXI9 565 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PEX26Q7Z412 305 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TRIM69Q86WT6 500 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZCCHC9Q8N567 271 aaKnown RBP16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RNF10Q8N5U6 811 aaKnown RBP16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 FATE1Q969F0 183 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MGME1Q9BQP7 344 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NUSAP1Q9BXS6 441 aaKnown RBP16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GUCA1BQ9UMX6 200 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CAPN6Q9Y6Q1 641 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NUMA1Q14980 2115 aa16.48■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RALGAPA1Q6GYQ0 2036 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 hCG_1818297A0A087WSY0 165 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MATN3O15232 486 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SERPINF2P08697 491 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SERPINA4P29622 427 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MAPK8P45983 427 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SCNN1BP51168 640 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RWDD2BP57060 319 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 COPS2P61201 443 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 AP1S1P61966 158 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 HNRNPDQ14103 355 aaKnown RBP16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SLC23A3Q6PIS1 610 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCDC13Q8IYE1 715 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PGBD5Q8N414 524 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TEX26Q8N6G2 289 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCNYQ8ND76 341 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MAML1Q92585 1016 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RAB7BQ96AH8 199 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZNF641Q96N77 438 aaPredicted RBP16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SUV39H2Q9H5I1 410 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ATP13A3Q9H7F0 1226 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NT5MQ9NPB1 228 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 DKK3Q9UBP4 350 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 FADS3Q9Y5Q0 445 aa16.47■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPC4 97 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MIF4GDA9UHW6 222 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PRR5-ARHGAP8B1AHC4 643 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PPP1R12AO14974 1030 aaPredicted RBP16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 BCAT2O15382 392 aaPredicted RBP16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 LATO43561 262 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 AP1G1O43747 822 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CST8O60676 142 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RNGTTO60942 597 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GJB3O75712 270 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 FTCDO95954 541 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TGM2P21980 687 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ABL2P42684 1182 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 IRX4P78413 519 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 BCL2L1Q07817 233 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PPIDQ08752 370 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PDK1Q15118 436 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms