RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 LYZL4Q96KX0 146 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 NPAS1Q99742 590 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 NTPCRQ9BSD7 190 aaKnown RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM204Q9BSN7 226 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 HDHD5Q9BXW7 423 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 MYLK2Q9H1R3 596 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 HIPK3Q9H422 1215 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CATSPERBQ9H7T0 1116 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF304Q9HCX3 659 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 SIRT3Q9NTG7 399 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 MTMR10Q9NXD2 777 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 KIF17Q9P2E2 1029 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 GRHPRQ9UBQ7 328 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CDH22Q9UJ99 828 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 SBF2Q86WG5 1849 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 KANK1Q14678 1352 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 KIAA0232Q92628 1395 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 BAHCC1Q9P281 2608 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 HFM1A2PYH4 1435 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 EEA1Q15075 1411 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ARHGAP31Q2M1Z3 1444 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PEAK1Q9H792 1746 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SZT2Q5T011 3432 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 A0A0G2JK05 382 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 C11orf97A0A1B0GVM6 126 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TNFRSF13BO14836 293 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ANP32CO43423 234 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 HBP1O60381 514 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ATG13O75143 517 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PEX14O75381 377 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 CBX6O95503 412 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TOMM40O96008 361 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 IL1AP01583 271 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TSPY4P0CV99 314 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TSPY10P0CW01 314 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TGFB3P10600 412 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 FCGR2AP12318 317 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 CHN1P15882 459 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 HOXB6P17509 224 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 MCCP23508 829 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TYK2P29597 1187 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 RFC1P35251 1148 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 MLH1P40692 756 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PNPLA4P41247 253 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 GRK6P43250 576 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TRAPPC10P48553 1259 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 HTR6P50406 440 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PAPOLAP51003 745 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 CLCNKBP51801 687 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TMPRSS3P57727 454 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 LINC00205P59089 165 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ROR2Q01974 943 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 RHAGQ02094 409 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 GRAMD1BQ3KR37 738 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PLK5Q496M5 336 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 LRRC24Q50LG9 513 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 VWA5B1Q5TIE3 1220 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 LIN54Q6MZP7 749 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 AADACL2Q6P093 401 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 MTFR2Q6P444 385 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 FBXO46Q6PJ61 603 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SLC16A12Q6ZSM3 486 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SMIM5Q71RC9 77 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 RTL10Q7L3V2 364 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SCN4BQ8IWT1 228 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM57Q8N5G2 664 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 LRRC57Q8N9N7 239 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 C9orf106Q8NAJ2 232 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SPATA5Q8NB90 893 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 GABPB2Q8TAK5 448 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 STT3BQ8TCJ2 826 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 CSGALNACT1Q8TDX6 532 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 NOC3LQ8WTT2 800 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 FAR1Q8WVX9 515 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ASB5Q8WWX0 329 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 THAP4Q8WY91 577 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 NCSTNQ92542 709 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 RBM17Q96I25 401 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ZPBPQ9BS86 351 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 DDX23Q9BUQ8 820 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 B3GNT4Q9C0J1 378 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 HIPK2Q9H2X6 1198 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ACAD9Q9H845 621 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 CHODLQ9H9P2 273 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PLEKHA2Q9HB19 425 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SPAG4Q9NPE6 437 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 THAP1Q9NVV9 213 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 PLK2Q9NYY3 685 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 WWOXQ9NZC7 414 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 KLQ9UEF7 1012 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 SRP68Q9UHB9 627 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ZHX1Q9UKY1 873 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 FZD10Q9ULW2 581 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 MYO6Q9UM54 1294 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 LZTS1Q9Y250 596 aa2.34□□□□□ -2.03
HMGB1-208ENST00000490788 RRP7AQ9Y3A4 280 aaKnown RBP2.34□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF644Q9H582 1327 aaPredicted RBP2.34□□□□□ -2.04
HMGB1-208ENST00000490788 THSD7BQ9C0I4 1608 aa2.34□□□□□ -2.04
HMGB1-208ENST00000490788 SBNO1A3KN83 1393 aa2.34□□□□□ -2.04
HMGB1-208ENST00000490788 METP08581 1390 aa2.34□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms