RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 INO80DQ53TQ3 878 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-213ENST00000489045 FIGNQ5HY92 759 aa23.34■■□□□ 1.33
COL9A3-213ENST00000489045 LUZP1Q86V48 1076 aa23.34■■□□□ 1.33
COL9A3-213ENST00000489045 SLC22A18ASQ8N1D0 253 aa23.34■■□□□ 1.33
COL9A3-213ENST00000489045 SNRNP25Q9BV90 132 aaKnown RBP23.34■■□□□ 1.33
COL9A3-213ENST00000489045 PCSK1NQ9UHG2 260 aa23.34■■□□□ 1.33
COL9A3-213ENST00000489045 FREM2Q5SZK8 3169 aa23.34■■□□□ 1.33
COL9A3-213ENST00000489045 EEF2KO00418 725 aaKnown RBP23.33■■□□□ 1.33
COL9A3-213ENST00000489045 NEMP1O14524 444 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 RAD51BO15315 384 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 SPINT1O43278 529 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 TSPAN6O43657 245 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 RNF8O76064 485 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 PAK4O96013 591 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-213ENST00000489045 TPM4P67936 248 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 FANCCQ00597 558 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 SMAD1Q15797 465 aaKnown RBP23.33■■□□□ 1.33
COL9A3-213ENST00000489045 ERMARDQ5T6L9 678 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 GDPD4Q6W3E5 623 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 PTAR1Q7Z6K3 402 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-213ENST00000489045 FNIP1Q8TF40 1166 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 BMFQ96LC9 184 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 KCTD15Q96SI1 283 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-213ENST00000489045 LRRC19Q9H756 370 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 KLHL11Q9NVR0 708 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 LHX3Q9UBR4 397 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 PCDHGA1Q9Y5H4 931 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 SCINQ9Y6U3 715 aa23.33■■□□□ 1.33
COL9A3-213ENST00000489045 LRRK1Q38SD2 2015 aa23.33■■□□□ 1.32
COL9A3-213ENST00000489045 FAM149AA5PLN7 773 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 POM121BA6NF01 834 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 IGLON5A6NGN9 336 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 RFPL3O75679 317 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 ACADVLP49748 655 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 RAD51Q06609 339 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 LRRC73Q5JTD7 316 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 KYAT3Q6YP21 454 aaKnown RBP23.32■■□□□ 1.32
COL9A3-213ENST00000489045 Q6ZSR6 202 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 ZSCAN30Q86W11 494 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 FAM174AQ8TBP5 190 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 TRIM11Q96F44 468 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 CELF6Q96J87 481 aaKnown RBP23.32■■□□□ 1.32
COL9A3-213ENST00000489045 EXOC2Q96KP1 924 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 C1QTNF2Q9BXJ5 285 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 CAAP1Q9H8G2 361 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 PDFQ9HBH1 243 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 DONSONQ9NYP3 566 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 MYO1AQ9UBC5 1043 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 UBA2Q9UBT2 640 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-213ENST00000489045 HS3ST3A1Q9Y663 406 aa23.32■■□□□ 1.32
COL9A3-213ENST00000489045 EIF3CLB5ME19 914 aaKnown RBP23.31■■□□□ 1.32
COL9A3-213ENST00000489045 MIPP30301 263 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 PBX1P40424 430 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 NDST2P52849 883 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 SGCGQ13326 291 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 CYTH1Q15438 398 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 TDRD12Q587J7 1177 aaKnown RBP23.31■■□□□ 1.32
COL9A3-213ENST00000489045 CYP4V2Q6ZWL3 525 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-213ENST00000489045 PROSER1Q86XN7 944 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 SLC25A45Q8N413 288 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 TSC1Q92574 1164 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 ARHGEF26Q96DR7 871 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 EIF3CQ99613 913 aaKnown RBP23.31■■□□□ 1.32
COL9A3-213ENST00000489045 GPR27Q9NS67 375 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 MFHAS1Q9Y4C4 1052 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 MYLKQ15746 1914 aa23.31■■□□□ 1.32
COL9A3-213ENST00000489045 J3KR12 359 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 TAF4O00268 1085 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 AREL1O15033 823 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 INSIG1O15503 277 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 PRPSAP2O60256 369 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 LRCH4O75427 683 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 MYBL1P10243 752 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 DGKAP23743 735 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 HGSNATQ68CP4 663 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 RFX8Q6ZV50 586 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 DCP2Q8IU60 420 aaKnown RBP23.3■■□□□ 1.32
COL9A3-213ENST00000489045 LENG8Q96PV6 779 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-213ENST00000489045 KLF6Q99612 283 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-213ENST00000489045 SLC39A8Q9C0K1 460 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 ISCUQ9H1K1 167 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 CCDC86Q9H6F5 360 aaKnown RBP23.3■■□□□ 1.32
COL9A3-213ENST00000489045 UCKL1Q9NWZ5 548 aa23.3■■□□□ 1.32
COL9A3-213ENST00000489045 DSPP15924 2871 aaKnown RBP23.3■■□□□ 1.32
COL9A3-213ENST00000489045 A0A1W2PQJ5 194 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 TRIM38O00635 465 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 FPGTO14772 594 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 DAPK3O43293 454 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 PRAMEF11O60813 436 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 PIAS2O75928 621 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 C1SP09871 688 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 PAPOLAP51003 745 aaKnown RBP23.29■■□□□ 1.32
COL9A3-213ENST00000489045 CLDN6P56747 220 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 UBASH3AP57075 661 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 PROX2Q3B8N5 592 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 PPP6R3Q5H9R7 873 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-213ENST00000489045 TTC7BQ86TV6 843 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 MDM1Q8TC05 714 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 ASB12Q8WXK4 309 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 NCAPGQ9BPX3 1015 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms