RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 GEMIN4P57678 1058 aaKnown RBP13.23□□□□□ -0.29
HDAC6-227ENST00000485102 PTK2BQ14289 1009 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 NR0B2Q15466 257 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 TPRG1LQ5T0D9 272 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 C6orf132Q5T0Z8 1188 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 FAM102AQ5T9C2 384 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-227ENST00000485102 MANEALQ5VSG8 457 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 WDR36Q8NI36 951 aaKnown RBP13.23□□□□□ -0.29
HDAC6-227ENST00000485102 MED8Q96G25 268 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 ATXN7L3BQ96GX2 97 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 OSBPL1AQ9BXW6 950 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 NUP62CLQ9H1M0 184 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 TMPRSS4Q9NRS4 437 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 KIAA1468Q9P260 1216 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 DACH1Q9UI36 760 aa13.23□□□□□ -0.29
HDAC6-227ENST00000485102 AJAP1Q9UKB5 411 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-227ENST00000485102 NTN3O00634 580 aaPredicted RBP13.22□□□□□ -0.29
HDAC6-227ENST00000485102 GCATO75600 419 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 POP4O95707 220 aaKnown RBP13.22□□□□□ -0.29
HDAC6-227ENST00000485102 GSRP00390 522 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 CYP11B1P15538 503 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 ABL2P42684 1182 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 MAPKAPK2P49137 400 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 DEFB133Q30KQ1 61 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 C3orf38Q5JPI3 329 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 CT47A1Q5JQC4 288 aaPredicted RBP13.22□□□□□ -0.29
HDAC6-227ENST00000485102 TRNP1Q6NT89 227 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 LVRNQ6Q4G3 990 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 XKR5Q6UX68 686 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 SLC35F3Q8IY50 421 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 SDR16C5Q8N3Y7 309 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 ARL14Q8N4G2 192 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 OR2AP1Q8NGE2 309 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 LMX1AQ8TE12 382 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 ARHGEF2Q92974 986 aaKnown RBP13.22□□□□□ -0.29
HDAC6-227ENST00000485102 ANP32EQ9BTT0 268 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 SEMA4CQ9C0C4 833 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 PLCB1Q9NQ66 1216 aa13.22□□□□□ -0.29
HDAC6-227ENST00000485102 FCF1Q9Y324 198 aaKnown RBP13.22□□□□□ -0.29
HDAC6-227ENST00000485102 CCDC187A0A096LP49 1063 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 GADD45BO75293 160 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-227ENST00000485102 ITGA2BP08514 1039 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 ADRA1BP35368 520 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 PEX5P50542 639 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 DNA2P51530 1060 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 SNRPD1P62314 119 aaKnown RBP13.21□□□□□ -0.29
HDAC6-227ENST00000485102 POLD3Q15054 466 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-227ENST00000485102 MAN2A1Q16706 1144 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 KLHL40Q2TBA0 621 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 MYLK3Q32MK0 819 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 ARL13BQ3SXY8 428 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 PERM1Q5SV97 790 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 NLRP14Q86W24 1093 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 FAM131BQ86XD5 332 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 MSANTD4Q8NCY6 345 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 LIN37Q96GY3 246 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-227ENST00000485102 MAGEH1Q9H213 219 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 CLSTN2Q9H4D0 955 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 ZDHHC6Q9H6R6 413 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 TMEM248Q9NWD8 314 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 DKK3Q9UBP4 350 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 OR12D3Q9UGF7 316 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 APOBEC3BQ9UH17 382 aaKnown RBP13.21□□□□□ -0.29
HDAC6-227ENST00000485102 ACSL6Q9UKU0 697 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 MFHAS1Q9Y4C4 1052 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 PCDHGA7Q9Y5G6 932 aa13.21□□□□□ -0.29
HDAC6-227ENST00000485102 TLN1Q9Y490 2541 aaKnown RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 ZSCAN5CA6NGD5 496 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 TMX2-CTNND1H3BSU7 103 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 NEMP1O14524 444 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 YY2O15391 372 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 ANXA6P08133 673 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 PNMA6AP0CW24 399 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 RHOQP17081 205 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 ACVRL1P37023 503 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 MTIF2P46199 727 aaKnown RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 BLKP51451 505 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 SUOXP51687 545 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 THOP1P52888 689 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 PDX1P52945 283 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 ADKP55263 362 aaKnown RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 CLN3Q13286 438 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 EIF3IQ13347 325 aaKnown RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 LY6DQ14210 128 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 DRAP1Q14919 205 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 PRRT3Q5FWE3 981 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 CCDC183Q5T5S1 534 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 MACC1Q6ZN28 852 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 CREBRFQ8IUR6 639 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 DRC7Q8IY82 874 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 PHACTR4Q8IZ21 702 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 FSTL5Q8N475 847 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 MLKLQ8NB16 471 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 HCAR2Q8TDS4 363 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 CASKIN2Q8WXE0 1202 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 CFAP57Q96MR6 1250 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 LRRC61Q9BV99 259 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 C1QTNF7Q9BXJ2 289 aa13.2□□□□□ -0.3
HDAC6-227ENST00000485102 NAA15Q9BXJ9 866 aaKnown RBP13.2□□□□□ -0.3
HDAC6-227ENST00000485102 SLC13A1Q9BZW2 595 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms