RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 DERAQ9Y315 318 aa3.39□□□□□ -1.87
VPS50-216ENST00000484954 CLDN16Q9Y5I7 305 aa3.39□□□□□ -1.87
VPS50-216ENST00000484954 A0A1B0GVM2 712 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 CHL1O00533 1208 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 GRID2O43424 1007 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 HBP1O60381 514 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 SERPINI2O75830 405 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 SERPINC1P01008 464 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 TTKP33981 857 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 ARSFP54793 590 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 RHBDL3P58872 404 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 ADORA2A-AS1P86434 159 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 DDR1Q08345 913 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 FAM27E3Q08E93 113 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 PRKG1Q13976 671 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 ZNF718Q3SXZ3 478 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 TYW3Q6IPR3 259 aaKnown RBP3.38□□□□□ -1.87
VPS50-216ENST00000484954 NOL8Q76FK4 1167 aaKnown RBP3.38□□□□□ -1.87
VPS50-216ENST00000484954 PATL1Q86TB9 770 aaKnown RBP3.38□□□□□ -1.87
VPS50-216ENST00000484954 PGBD5Q8N414 524 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 TCP11L2Q8N4U5 519 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 ZNF114Q8NC26 417 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 MCPH1Q8NEM0 835 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 TRAPPC12Q8WVT3 735 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 YME1L1Q96TA2 773 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 LMAN2LQ9H0V9 348 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 RETREG1Q9H6L5 497 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 KIF17Q9P2E2 1029 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 KCNG2Q9UJ96 466 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 ICAM5Q9UMF0 924 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 SLC45A1Q9Y2W3 748 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 WDR81Q562E7 1941 aa3.38□□□□□ -1.87
VPS50-216ENST00000484954 NPIPB11E5RHQ5 1161 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 SSTR2P30874 369 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 GPR12P47775 334 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 MCM2P49736 904 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 DLX5P56178 289 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 ACTR2P61160 394 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 ILF3Q12906 894 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS50-216ENST00000484954 MYBPHQ13203 477 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 DHX34Q14147 1143 aaKnown RBP3.37□□□□□ -1.87
VPS50-216ENST00000484954 SLC39A14Q15043 492 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 SF3B4Q15427 424 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS50-216ENST00000484954 SLC18A3Q16572 532 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 KIF19Q2TAC6 998 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 KRTAP24-1Q3LI83 254 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 C9orf50Q5SZB4 431 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 MB21D2Q8IYB1 491 aaPredicted RBP3.37□□□□□ -1.87
VPS50-216ENST00000484954 GHDCQ8N2G8 530 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 CEP70Q8NHQ1 597 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 SPATA20Q8TB22 786 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 ARRDC2Q8TBH0 407 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 SDCCAG3Q96C92 435 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 FAM167BQ9BTA0 163 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 PAGR1Q9BTK6 254 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 NPLQ9BXD5 320 aaPredicted RBP3.37□□□□□ -1.87
VPS50-216ENST00000484954 MORC2Q9Y6X9 1032 aaPredicted RBP3.37□□□□□ -1.87
VPS50-216ENST00000484954 ADGRF5Q8IZF2 1346 aa3.37□□□□□ -1.87
VPS50-216ENST00000484954 SLC16A5O15375 505 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 LDB3O75112 727 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 CH25HO95992 272 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 PLGP00747 810 aaPredicted RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 IGKV3-20P01619 116 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 SNRNP70P08621 437 aaKnown RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 CENPAP49450 140 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 TRAF2Q12933 501 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 ZNF672Q499Z4 452 aaPredicted RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 DENND1BQ6P3S1 775 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 RHBDF2Q6PJF5 856 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 ZNF771Q7L3S4 317 aaPredicted RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 HERC6Q8IVU3 1022 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 FTSJ3Q8IY81 847 aaKnown RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 TMEM57Q8N5G2 664 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 AADATQ8N5Z0 425 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 ENAHQ8N8S7 591 aaPredicted RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 DNAAF1Q8NEP3 725 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 RFWD2Q8NHY2 731 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 HSPH1Q92598 858 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 SCMH1Q96GD3 660 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 ADGRG7Q96K78 797 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS50-216ENST00000484954 SLC32A1Q9H598 525 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 STN1Q9H668 368 aaKnown RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 TTC12Q9H892 705 aaPredicted RBP3.36□□□□□ -1.87
VPS50-216ENST00000484954 PTPRHQ9HD43 1115 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 ITM2CQ9NQX7 267 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 MALT1Q9UDY8 824 aa3.36□□□□□ -1.87
VPS50-216ENST00000484954 LOC102724159A0A0B4J2E5 919 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 A0A0U1RQJ8 604 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 DENND3A2RUS2 1198 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 FAM90A7PA6NKC0 464 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 FAM90A22PA8MWA6 464 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 FAM90A12PA8MX19 464 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 FAM90A23PA8MXZ1 464 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 VNN2O95498 520 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 EDN2P20800 178 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 PIGAP37287 484 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 RPL3P39023 403 aaKnown RBP3.35□□□□□ -1.87
VPS50-216ENST00000484954 BRWD1-AS2P59051 145 aa3.35□□□□□ -1.87
VPS50-216ENST00000484954 DLG1Q12959 904 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms