RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SYCE1Q8N0S2 351 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 BBS5Q8N3I7 341 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 DEFB119Q8N690 84 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 TSEN2Q8NCE0 465 aaKnown RBP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 OR6K2Q8NGY2 324 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 OR14C36Q8NHC7 312 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 KIAA1524Q8TCG1 905 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 KRT35Q92764 455 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 ZNF641Q96N77 438 aaPredicted RBP16.1■□□□□ 0.17
UPF3A-208ENST00000484246 CAPN10Q9HC96 672 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 TRIM10Q9UDY6 481 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 EFR3BQ9Y2G0 817 aa16.1■□□□□ 0.17
UPF3A-208ENST00000484246 EP300Q09472 2414 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 hCG_1818297A0A087WSY0 165 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 A0A0U1RQJ8 604 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 A0A1B0GTW7 788 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 KHNYNO15037 678 aaKnown RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 MUSKO15146 869 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 UGT2B4P06133 528 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 SERPINF2P08697 491 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 ADRB3P13945 408 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 GNSP15586 552 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 GKP32189 559 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 NR2C2P49116 596 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 SUOXP51687 545 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 LIMK1P53667 647 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 PPIDQ08752 370 aaKnown RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 SLC10A2Q12908 348 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 ZNF235Q14590 738 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 POM121L1PQ3SYA9 428 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 ODF2Q5BJF6 829 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 TFDP3Q5H9I0 405 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 NT5DC3Q86UY8 548 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 RYBPQ8N488 228 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 NSMCE1Q8WV22 266 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 RNF25Q96BH1 459 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 ECHDC3Q96DC8 303 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 EXOC2Q96KP1 924 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 ZNF830Q96NB3 372 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 BRD8Q9H0E9 1235 aa16.09■□□□□ 0.17
UPF3A-208ENST00000484246 ATXN2Q99700 1313 aaKnown RBP16.09■□□□□ 0.17
UPF3A-208ENST00000484246 TNRC6BQ9UPQ9 1833 aaKnown RBP16.08■□□□□ 0.17
UPF3A-208ENST00000484246 A0A1W2PPC4 97 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 MACROD2A1Z1Q3 448 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 C16orf96A6NNT2 1141 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 MIF4GDA9UHW6 222 aaKnown RBP16.08■□□□□ 0.16
UPF3A-208ENST00000484246 PRR5-ARHGAP8B1AHC4 643 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 PLK4O00444 970 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 AREL1O15033 823 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 MATN3O15232 486 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 INSIG1O15503 277 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 KRT86O43790 486 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 CCDC175P0C221 793 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 TGM2P21980 687 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 MMP13P45452 471 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 PEX5P50542 639 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 NAP1L1P55209 391 aaKnown RBP16.08■□□□□ 0.16
UPF3A-208ENST00000484246 ARHGAP8P85298 464 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 SF3A2Q15428 464 aaKnown RBP16.08■□□□□ 0.16
UPF3A-208ENST00000484246 TRIM61Q5EBN2 209 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 MARC1Q5VT66 337 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 SRLQ86TD4 932 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 C12orf50Q8NA57 414 aaPredicted RBP16.08■□□□□ 0.16
UPF3A-208ENST00000484246 PDLIM2Q96JY6 352 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 NUDCD1Q96RS6 583 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 MAK16Q9BXY0 300 aaKnown RBP16.08■□□□□ 0.16
UPF3A-208ENST00000484246 ATP13A3Q9H7F0 1226 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 SLC6A14Q9UN76 642 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 DMTF1Q9Y222 760 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 FADS3Q9Y5Q0 445 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 CAPN6Q9Y6Q1 641 aa16.08■□□□□ 0.16
UPF3A-208ENST00000484246 SPAG17Q6Q759 2223 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 CFAP54Q96N23 3096 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.07■□□□□ 0.16
UPF3A-208ENST00000484246 LNP1A1A4G5 178 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 BCAT2O15382 392 aaPredicted RBP16.07■□□□□ 0.16
UPF3A-208ENST00000484246 SPINT1O43278 529 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 SOCS5O75159 536 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 FSBPO95073 299 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 TNNT1P13805 278 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 SERPINA4P29622 427 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 ABL2P42684 1182 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 GRIA4P48058 902 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 PPP2CBP62714 309 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 PPP2CAP67775 309 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 IFI35P80217 286 aaPredicted RBP16.07■□□□□ 0.16
UPF3A-208ENST00000484246 PDK1Q15118 436 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 CCDC6Q16204 474 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 TMEM259Q4ZIN3 620 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 KIAA1161Q6NSJ0 714 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 BRAT1Q6PJG6 821 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 BBS12Q6ZW61 710 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 BZW1Q7L1Q6 419 aaKnown RBP16.07■□□□□ 0.16
UPF3A-208ENST00000484246 RFX6Q8HWS3 928 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 KIAA2013Q8IYS2 634 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 RGL4Q8IZJ4 473 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 PGBD5Q8N414 524 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 KLHL32Q96NJ5 620 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 SUV39H2Q9H5I1 410 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms