RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 IMP4Q96G21 291 aaKnown RBP12.39□□□□□ -0.43
SDC1-206ENST00000482879 RBM15Q96T37 977 aaKnown RBP eCLIP12.39□□□□□ -0.43
SDC1-206ENST00000482879 FAM129BQ96TA1 746 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 TRIM51Q9BSJ1 452 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 CHRDQ9H2X0 955 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 ZDHHC6Q9H6R6 413 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 POLR3BQ9NW08 1133 aaPredicted RBP12.39□□□□□ -0.43
SDC1-206ENST00000482879 IL36AQ9UHA7 158 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 ASIC3Q9UHC3 531 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.38□□□□□ -0.43
SDC1-206ENST00000482879 A0A1W2PQF6 199 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 ALOX15BO15296 676 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 PI15O43692 258 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 RNASEH1O60930 286 aaKnown RBP12.38□□□□□ -0.43
SDC1-206ENST00000482879 MT-CYBP00156 380 aaPredicted RBP12.38□□□□□ -0.43
SDC1-206ENST00000482879 MMP2P08253 660 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 ADCY8P40145 1251 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 GEMP55040 296 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 SKOR1P84550 965 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 BCL2L1Q07817 233 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 PTK6Q13882 451 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 ELAVL3Q14576 367 aaKnown RBP12.38□□□□□ -0.43
SDC1-206ENST00000482879 GRM3Q14832 879 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 CRY1Q16526 586 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 ARSIQ5FYB1 569 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 FAXCQ5TGI0 409 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 C8orf74Q6P047 294 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 TMEM92Q6UXU6 159 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 SYT13Q7L8C5 426 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 DSG4Q86SJ6 1040 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 PRPF39Q86UA1 669 aaKnown RBP12.38□□□□□ -0.43
SDC1-206ENST00000482879 SPEM1Q8N4L4 309 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 LRRN4CLQ8ND94 238 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 OR2T3Q8NH03 318 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 GRIN3AQ8TCU5 1115 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 CCHCR1Q8TD31 782 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 NSMCE3Q96MG7 304 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 LRRC1Q9BTT6 524 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 CPEB1Q9BZB8 566 aaKnown RBP12.38□□□□□ -0.43
SDC1-206ENST00000482879 ATP13A3Q9H7F0 1226 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 ETNK1Q9HBU6 452 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 RAB6BQ9NRW1 208 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 UBP1Q9NZI7 540 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 FAM153AQ9UHL3 310 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 WASF2Q9Y6W5 498 aa12.38□□□□□ -0.43
SDC1-206ENST00000482879 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 GOLGA6CA6NDK9 693 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 GOLGA6BA6NDN3 693 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PSMD3O43242 534 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PMPCBO75439 489 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 LEFTY1O75610 366 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 ANXA9O76027 345 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 SLU7O95391 586 aaKnown RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 PIGNO95427 931 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 IL1BP01584 269 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PRNPP04156 253 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 CTSLP07711 333 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 GOLGA6DP0CG33 693 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 SERPINA4P29622 427 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 MAGEA9P43362 315 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 CLCN5P51795 746 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 TERF1P54274 439 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 BASP1P80723 227 aaKnown RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 IHHQ14623 411 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 GDPD4Q6W3E5 623 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 CAMK1DQ8IU85 385 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 MMAAQ8IVH4 418 aaKnown RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 PAF1Q8N7H5 531 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 TMIEQ8NEW7 156 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PIP4K2CQ8TBX8 421 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PBXIP1Q96AQ6 731 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 LRRC45Q96CN5 670 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 OXNAD1Q96HP4 312 aaPredicted RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 LRIG1Q96JA1 1093 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PPP1R2P1Q96PQ5 205 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 TUBGCP5Q96RT8 1024 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 GORASP1Q9BQQ3 440 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 MLPHQ9BV36 600 aaPredicted RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 TRIM31Q9BZY9 425 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 RSPH9Q9H1X1 276 aaPredicted RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 SUV39H2Q9H5I1 410 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 EPHX3Q9H6B9 360 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 FBRSQ9HAH7 460 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 POLMQ9NP87 494 aaPredicted RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 VPS45Q9NRW7 570 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 GOLGA6AQ9NYA3 693 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 PPM1HQ9ULR3 514 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 AAR2Q9Y312 384 aaKnown RBP12.37□□□□□ -0.43
SDC1-206ENST00000482879 PCDHGC4Q9Y5F7 938 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 RAI2Q9Y5P3 530 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 VCANP13611 3396 aa12.37□□□□□ -0.43
SDC1-206ENST00000482879 TCRBV21S2A2A0A5A6 115 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 EFCAB8A8MWE9 144 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 E7EVH7 732 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 C1QTNF3-AMACRE9PGA6 284 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 TNFRSF10AO00220 468 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 KPNA3O00505 521 aaPredicted RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 RIOK3O14730 519 aaKnown RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 UGT2B4P06133 528 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 AOC1P19801 751 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms