RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PYROXD2Q8N2H3 581 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DENND6BQ8NEG7 585 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FAM172AQ8WUF8 416 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TBC1D31Q96DN5 1066 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ERGIC2Q96RQ1 377 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SYT11Q9BT88 431 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DUSP23Q9BVJ7 150 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TM6SF2Q9BZW4 377 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 KLC2Q9H0B6 622 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ZDHHC6Q9H6R6 413 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ADAM22Q9P0K1 906 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GGT7Q9UJ14 662 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PNMA8BQ9ULN7 279 aaPredicted RBP12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CFAP46Q8IYW2 2715 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NEMP2A6NFY4 417 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ZSCAN5CA6NGD5 496 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 BRINP1O60477 761 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RAMP2O60895 175 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DXOO77932 396 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GPD1P21695 349 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ZNF143P52747 638 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 YBEYP58557 167 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SNRPD1P62314 119 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SEMG2Q02383 582 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NCAPHQ15003 741 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 POLD3Q15054 466 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SYCP1Q15431 976 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RWDD4Q6NW29 188 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PTAR1Q7Z6K3 402 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SLFN11Q7Z7L1 901 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 UMODL1-AS1Q8N2C9 162 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RTL3Q8N8U3 475 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ZNF548Q8NEK5 533 aaPredicted RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CASKIN2Q8WXE0 1202 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FGF11Q92914 225 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 OSBPL1AQ9BXW6 950 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CPEB1Q9BZB8 566 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TTYH3Q9C0H2 523 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DNAJC28Q9NX36 388 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DKK3Q9UBP4 350 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 AK5Q9Y6K8 562 aa12.43□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LGALS16A8MUM7 142 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RIOK3O14730 519 aaKnown RBP12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TPP1O14773 563 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FFAR2O15552 330 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NEBLO76041 1014 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TMCC1O94876 653 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CALB1P05937 261 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 UGT2B4P06133 528 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MYF5P13349 255 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TIMP2P16035 220 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ABCG1P45844 678 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NSFP46459 744 aaKnown RBP12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RPL7AP62424 266 aaKnown RBP12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SGCGQ13326 291 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SERINC3Q13530 473 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TBC1D25Q3MII6 688 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FKBP15Q5T1M5 1219 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ATXN7L2Q5T6C5 722 aaPredicted RBP12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 KDM7AQ6ZMT4 941 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TMC6Q7Z403 805 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 IRF2BP2Q7Z5L9 587 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PARGQ86W56 976 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 OR6K2Q8NGY2 324 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HCAR2Q8TDS4 363 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ARHGEF26Q96DR7 871 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HIC2Q96JB3 615 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TBATAQ96M53 351 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 KLHL32Q96NJ5 620 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SALL4Q9UJQ4 1053 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FZD10Q9ULW2 581 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HPCAL4Q9UM19 191 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ITM2BQ9Y287 266 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SSUH2Q9Y2M2 353 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PCDHB1Q9Y5F3 818 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RAI2Q9Y5P3 530 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LRP4O75096 1905 aa12.42□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ANKRD36A6QL64 1941 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 UNC13CQ8NB66 2214 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 A0A1W2PNU3 283 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TSPAN11A1L157 253 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 EME2A4GXA9 379 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 KRIT1O00522 736 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FPGTO14772 594 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CCP110O43303 1012 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GCATO75600 419 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ALPPL2P10696 532 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ITIH2P19823 946 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DUSP3P51452 185 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 AIF1P55008 147 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 YPEL5P62699 121 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DAB2P98082 770 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 OGDHQ02218 1023 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PDE1CQ14123 709 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 AGERQ15109 404 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CYTH1Q15438 398 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ZCCHC8Q6NZY4 707 aaKnown RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 IGF2-ASQ6U949 168 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GDPD4Q6W3E5 623 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LEKR1Q6ZMV7 388 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms