RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FAM172BPA6NC97 362 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 HNRNPDLO14979 420 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 FFAR2O15552 330 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 NBNO60934 754 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 SLC22A3O75751 556 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 CH25HO95992 272 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 HLA-DQA2P01906 255 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 ALDH18A1P54886 795 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 CYP4A11Q02928 519 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 TROAPQ12815 778 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 STARD3Q14849 445 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF569Q5MCW4 686 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 PLA2G4FQ68DD2 849 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 GGT6Q6P531 493 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 CCDC174Q6PII3 467 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 PATL1Q86TB9 770 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF527Q8NB42 609 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 SLC2A12Q8TD20 617 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF385AQ96PM9 386 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 DUX3Q96PT4 197 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 LRRC4Q9HBW1 653 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 TM7SF3Q9NS93 570 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 UPB1Q9UBR1 384 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF711Q9Y462 761 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 PCDHAC2Q9Y5I4 1007 aa3.39□□□□□ -1.87
CCDC88A-212ENST00000474059 TARSL2A2RTX5 802 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 CPED1A4D0V7 1026 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 KDM4BO94953 1096 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 CRYAAP02489 173 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 MMP3P08254 477 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 AVPR2P30518 371 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 HALP42357 657 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 DPP6P42658 865 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 OAZ1P54368 228 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 LINC01547P58512 204 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 PUM3Q15397 648 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 ZRSR2Q15696 482 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 ZACNQ401N2 412 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 PGBD2Q6P3X8 592 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 GDPD4Q6W3E5 623 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 AADATQ8N5Z0 425 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 MAPK1IP1LQ8NDC0 245 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 SPATA22Q8NHS9 363 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 STT3BQ8TCJ2 826 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 MUL1Q969V5 352 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 MVB12BQ9H7P6 319 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 LRFN1Q9P244 771 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 SLC39A10Q9ULF5 831 aa3.38□□□□□ -1.87
CCDC88A-212ENST00000474059 IGKV3D-20A0A0C4DH25 116 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 GOLGA6L3A6NEY3 463 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 LGALS16A8MUM7 142 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 HNRNPCL2B2RXH8 293 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF587BE7ETH6 402 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 PIP5K1CO60331 668 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 LARGE1O95461 756 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 LINC00271P0C7V0 271 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 PDIA3P30101 505 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 RFC1P35251 1148 aaPredicted RBP3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 CHKAP35790 457 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 NR0B1P51843 470 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 FUT6P51993 359 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 PHEXP78562 749 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 ICA1Q05084 483 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 GALNT1Q10472 559 aaPredicted RBP3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 PFKFB4Q16877 469 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 GXYLT1Q4G148 440 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 CCDC38Q502W7 563 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 ANO1Q5XXA6 986 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 CCDC129Q6ZRS4 1044 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 TRMT1LQ7Z2T5 733 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 SATL1Q86VE3 508 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 NRSN1Q8IZ57 195 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 NKAPQ8N5F7 415 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 MAB21L3Q8N8X9 362 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 OR4N2Q8NGD1 307 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 FBXO17Q96EF6 278 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 HERPUD2Q9BSE4 406 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 PDE11AQ9HCR9 933 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 OBP2BQ9NPH6 170 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 TMEM51Q9NW97 253 aa3.37□□□□□ -1.87
CCDC88A-212ENST00000474059 ASNA1O43681 348 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 EXTL3O43909 919 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 SKAP2O75563 359 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 CSTBP04080 98 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 CDKN1AP38936 164 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 NLRP5P59047 1200 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 FAM27E3Q08E93 113 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 BLMHQ13867 455 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 PDCD2Q16342 344 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 C19orf48Q6RUI8 117 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 RINLQ6ZS11 566 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 MYCT1Q8N699 235 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 ANKRD42Q8N9B4 389 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 LNX1Q8TBB1 728 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 HMGB4Q8WW32 186 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 ANKRD9Q96BM1 317 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 CXorf56Q9H5V9 222 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 SEPSECSQ9HD40 501 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 DDX43Q9NXZ2 648 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms