RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ATXN1LP0C7T5 689 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CSF2RAP15509 400 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ZNF24P17028 368 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 JAK1P23458 1154 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ADSSP30520 456 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 KCNJ5P48544 419 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 NR2C2P49116 596 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ACTR1AP61163 376 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 HOXA4Q00056 320 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CHRNDQ07001 517 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 AIMP1Q12904 312 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 EPS8Q12929 822 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CBX3Q13185 183 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 MORF4L2Q15014 288 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 IQCB1Q15051 598 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CCDC40Q4G0X9 1142 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 MTFR2Q6P444 385 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 MTHFD1LQ6UB35 978 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ZYG11AQ6WRX3 759 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CATSPERGQ6ZRH7 1159 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CENPQQ7L2Z9 268 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 HDDC3Q8N4P3 179 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 SRBD1Q8N5C6 995 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ATP11CQ8NB49 1132 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 SPATA20Q8TB22 786 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 AGR3Q8TD06 166 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 BRIX1Q8TDN6 353 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ACMSDQ8TDX5 336 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ZNF566Q969W8 418 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 TCEANC2Q96MN5 208 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 TUBA1CQ9BQE3 449 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 TSPYL1Q9H0U9 437 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 VPS16Q9H269 839 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 MMADHCQ9H3L0 296 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 ZBTB40Q9NUA8 1239 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 PNPOQ9NVS9 261 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 NINJ2Q9NZG7 142 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 SPATA7Q9P0W8 599 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 DNAJB9Q9UBS3 223 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 AURKCQ9UQB9 309 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 CAMK2AQ9UQM7 478 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 PIN4Q9Y237 131 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 STXBP5LQ9Y2K9 1186 aa5.03□□□□□ -1.6
CCDC88A-210ENST00000468534 A1L4Q6 167 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CTAGE15A4D2H0 777 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 GPR89AB7ZAQ6 455 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 H0YHG0 523 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PGRMC2O15173 223 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 EXOC3O60645 756 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PNPP00491 289 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 NPPAP01160 153 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 IFNB1P01574 187 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 HNRNPA1P09651 372 aaKnown RBP eCLIP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 GPR89BP0CG08 455 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CTAGE8P0CG41 777 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PCNAP12004 261 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PRLRP16471 622 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 DNAJB1P25685 340 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 EEF1DP29692 281 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CIITAP33076 1130 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 DIO1P49895 249 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CPT1AP50416 773 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 KCNJ10P78508 379 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 GABPB1Q06547 395 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CETN1Q12798 172 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CAMK2DQ13557 499 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 SNX1Q13596 522 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 FHL1Q13642 323 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 TCP11X2Q5H9J9 407 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 MIS18BP1Q6P0N0 1132 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PPP1R21Q6ZMI0 780 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 TRIM72Q6ZMU5 477 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PARS2Q7L3T8 475 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 R3HCC1LQ7Z5L2 792 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 TECPR1Q7Z6L1 1165 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CTAGE6Q86UF2 777 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 TMEM200AQ86VY9 491 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CTAGE4Q8IX94 777 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 TTC39CQ8N584 583 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 TRIML2Q8N7C3 387 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 WASF1Q92558 559 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PTDSS2Q9BVG9 487 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 FSD1LQ9BXM9 530 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 GPR63Q9BZJ6 419 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PRSS22Q9GZN4 317 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 GLT8D2Q9H1C3 349 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 HSD3B7Q9H2F3 369 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 NDST4Q9H3R1 872 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 FANCEQ9HB96 536 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 IL1RAPL1Q9NZN1 696 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 COX16Q9P0S2 106 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 HMG20BQ9P0W2 317 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 FBXO40Q9UH90 709 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CPSF3Q9UKF6 684 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF215Q9UL58 517 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CLEC4AQ9UMR7 237 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 PCDHA6Q9UN73 950 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 CLDN16Q9Y5I7 305 aa5.02□□□□□ -1.61
CCDC88A-210ENST00000468534 GAKO14976 1311 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 MAP3K19Q56UN5 1328 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms