RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NT5MQ9NPB1 228 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 RBM22Q9NW64 420 aaKnown RBP eCLIP20.05■□□□□ 0.83e-19■■□□□ 13.4
COL9A3-204ENST00000463487 MBD1Q9UIS9 605 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-204ENST00000463487 TTLL3Q9Y4R7 772 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 A0A1W2PQ67 120 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 PECAM1P16284 738 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 CA4P22748 312 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 XPAP23025 273 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 DRD3P35462 400 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 IFI35P80217 286 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 NOMO1Q15155 1222 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 ZNF569Q5MCW4 686 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 ERN2Q76MJ5 926 aaKnown RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 CDKL3Q8IVW4 592 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 OR2T34Q8NGX1 318 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 HCAR2Q8TDS4 363 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 RAB7BQ96AH8 199 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 CD93Q9NPY3 652 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 SEPT10Q9P0V9 454 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 NCDNQ9UBB6 729 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 SAE1Q9UBE0 346 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 PYCARDQ9ULZ3 195 aa20.04■□□□□ 0.8
COL9A3-204ENST00000463487 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.04■□□□□ 0.8
COL9A3-204ENST00000463487 WDFY4Q6ZS81 3184 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 MEI4A8MW99 385 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 H7C0C1 242 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 KCNK1O00180 336 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 STK10O94804 968 aaKnown RBP20.03■□□□□ 0.8
COL9A3-204ENST00000463487 NFKBIAP25963 317 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 GKP32189 559 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 ACSL1P33121 698 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 ATP5OP48047 213 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 DHPSP49366 369 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-204ENST00000463487 SUOXP51687 545 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 ADPRHP54922 357 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 OTUD4Q01804 1114 aaKnown RBP20.03■□□□□ 0.8
COL9A3-204ENST00000463487 ADCY2Q08462 1091 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 CNTN1Q12860 1018 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 LPAL2Q16609 132 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 SLC45A4Q5BKX6 768 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 WDR45BQ5MNZ6 344 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 DCAF12L1Q5VU92 463 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 LYSMD4Q5XG99 296 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 BRAT1Q6PJG6 821 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 ZC3H18Q86VM9 953 aaKnown RBP20.03■□□□□ 0.8
COL9A3-204ENST00000463487 TMEFF1Q8IYR6 380 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 FRMD1Q8N878 549 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 MAIP1Q8WWC4 291 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 KLHL32Q96NJ5 620 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 VAT1Q99536 393 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 PREBQ9HCU5 417 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 DKK3Q9UBP4 350 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 SERGEFQ9UGK8 458 aa20.03■□□□□ 0.8
COL9A3-204ENST00000463487 FAM47DPA6NHR8 397 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 C16orf96A6NNT2 1141 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 INSIG1O15503 277 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 SOCS5O75159 536 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 JCHAINP01591 159 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 ADRB3P13945 408 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 RGRP47804 291 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 EIF3EP60228 445 aaKnown RBP20.02■□□□□ 0.8
COL9A3-204ENST00000463487 POLR2LP62875 67 aaKnown RBP20.02■□□□□ 0.8
COL9A3-204ENST00000463487 PRKD1Q15139 912 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-204ENST00000463487 AGBL4Q5VU57 503 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 AADACL2Q6P093 401 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 CYP2U1Q7Z449 544 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 ZSCAN30Q86W11 494 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 SUMF1Q8NBK3 374 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 ACTL9Q8TC94 416 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 FAM131CQ96AQ9 280 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 ARRDC3Q96B67 414 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 HSPA12BQ96MM6 686 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 QKIQ96PU8 341 aaKnown RBP eCLIP20.02■□□□□ 0.8
COL9A3-204ENST00000463487 IL12RB2Q99665 862 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 TLR10Q9BXR5 811 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 FRMD8P1Q9BZ68 369 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-204ENST00000463487 SUV39H2Q9H5I1 410 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 PCDHGA5Q9Y5G8 931 aa20.02■□□□□ 0.8
COL9A3-204ENST00000463487 SPAG17Q6Q759 2223 aa20.02■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3DA0A087WVF3 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3IA0A087WXS9 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3EA0A087X179 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3KA0A087X1G2 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3FA6NER0 549 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3LB9A6J9 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 NEMP1O14524 444 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 MUSKO15146 869 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 PLRG1O43660 514 aaKnown RBP20.01■□□□□ 0.79
COL9A3-204ENST00000463487 RETP07949 1114 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 SERPINF2P08697 491 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3HP0C7X1 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 MAXP61244 160 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 PIP5KL1Q5T9C9 394 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3GQ6DHY5 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 ALG1LQ6GMV1 187 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 TBC1D3CQ6IPX1 549 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 NEK5Q6P3R8 708 aa20.01■□□□□ 0.79
COL9A3-204ENST00000463487 NCEH1Q6PIU2 408 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms