RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GOT1P17174 413 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 EPHB2P29323 1055 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 SLC6A4P31645 630 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 SERPINB6P35237 376 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 GRIA4P48058 902 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 NRG1Q02297 640 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 MMRN1Q13201 1228 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 FAM133BQ5BKY9 247 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 MS4A13Q5J8X5 152 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 PIK3R6Q5UE93 754 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 RAP1GAP2Q684P5 730 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 MBLAC2Q68D91 279 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 RWDD4Q6NW29 188 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 RFWD3Q6PCD5 774 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 BBS12Q6ZW61 710 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 ADAT2Q7Z6V5 191 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 FAM71BQ8TC56 605 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 HNRNPLLQ8WVV9 542 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 FAF2Q96CS3 445 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 TMA16Q96EY4 203 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 MYEOVQ96EZ4 313 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 BBC3Q96PG8 261 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 CDC6Q99741 560 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 CARD6Q9BX69 1037 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 CATSPERBQ9H7T0 1116 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 ANLNQ9NQW6 1124 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 STIM2Q9P246 746 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 DKK4Q9UBT3 224 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 OR12D3Q9UGF7 316 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 XPO7Q9UIA9 1087 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 PLA2G4CQ9UP65 541 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 EFR3BQ9Y2G0 817 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 SNX10Q9Y5X0 201 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 CFAP46Q8IYW2 2715 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 PTPRQQ9UMZ3 2332 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 DOCK4Q8N1I0 1966 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 C10orf142B7Z368 130 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 CCDC188H7C350 402 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 I6L893 689 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 CST8O60676 142 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TBL1XO60907 577 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 LRIG2O94898 1065 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 SLU7O95391 586 aaKnown RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 DLDP09622 509 aaKnown RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TACR2P21452 398 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TGM2P21980 687 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 CD27P26842 260 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 CTSKP43235 329 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 ZBTB16Q05516 673 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 C2orf54Q08AI8 447 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TAZQ16635 292 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 ANKRD20A8PQ5CZ79 823 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 RABGAP1LQ5R372 815 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TMCO3Q6UWJ1 677 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 ZNF572Q7Z3I7 529 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 AHI1Q8N157 1196 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TTC13Q8NBP0 860 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 TSC1Q92574 1164 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 IGSF8Q969P0 613 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 HAUS1Q96CS2 278 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 RPRD1AQ96P16 312 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 RNF157Q96PX1 679 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 BTBD1Q9H0C5 482 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 RSPH9Q9H1X1 276 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 EBF2Q9HAK2 575 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 CWC15Q9P013 229 aaKnown RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 SERGEFQ9UGK8 458 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 INTS6Q9UL03 887 aaKnown RBP12.38□□□□□ -0.43
PTPRF-208ENST00000437607 VANGL2Q9ULK5 521 aa12.38□□□□□ -0.43
PTPRF-208ENST00000437607 FAM149AA5PLN7 773 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 TRABD2BA6NFA1 517 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FAM72CH0Y354 149 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 APOC4-APOC2K7ER74 178 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 PDE2AO00408 941 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 MCF2LO15068 1137 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 TNFSF14O43557 240 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 PCDHGA12O60330 932 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 PHF2O75151 1096 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FSBPO95073 299 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 APOC2P02655 101 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 DNTTP04053 509 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 GRK6P43250 576 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 CCT8P50990 548 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 IL9RQ01113 521 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 CYP4F3Q08477 520 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 KLF1Q13351 362 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 AUHQ13825 339 aaKnown RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 DPYSQ14117 519 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 SUZ12Q15022 739 aaKnown RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 TEAD4Q15561 434 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 SMAD1Q15797 465 aaKnown RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FAM72AQ5TYM5 149 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 MANEALQ5VSG8 457 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 TTC39BQ5VTQ0 682 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-208ENST00000437607 SLC9A4Q6AI14 798 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 NADSYN1Q6IA69 706 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FAM72DQ6L9T8 149 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 FAM72BQ86X60 149 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 LGI2Q8N0V4 545 aa12.37□□□□□ -0.43
PTPRF-208ENST00000437607 PCDH19Q8TAB3 1148 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms