RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ALDH2P05091 517 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 HAPLN1P10915 354 aaPredicted RBP9.59□□□□□ -0.87
CUX1-206ENST00000437600 HNRNPLP14866 589 aaKnown RBP eCLIP9.59□□□□□ -0.876e-8■■■■■ 28.9
CUX1-206ENST00000437600 HDCP19113 662 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 EFEMP1Q12805 493 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 MUM1Q2TAK8 710 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 ALFQ53S48 1182 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 C1orf146Q5VVC0 180 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 NXNQ6DKJ4 435 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 PM20D1Q6GTS8 502 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TIFABQ6ZNK6 161 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 RIPOR1Q6ZS17 1223 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 PTAR1Q7Z6K3 402 aaPredicted RBP9.59□□□□□ -0.87
CUX1-206ENST00000437600 ARHGAP12Q8IWW6 846 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 SCUBE1Q8IWY4 988 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 C7orf61Q8IZ16 206 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 CFAP52Q8N1V2 620 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 SCG3Q8WXD2 468 aaKnown RBP9.59□□□□□ -0.87
CUX1-206ENST00000437600 SEPT8Q92599 483 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 CASD1Q96PB1 797 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 MARCH5Q9NX47 278 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 PLA2G4CQ9UP65 541 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 FNDC3AQ9Y2H6 1198 aaKnown RBP9.59□□□□□ -0.87
CUX1-206ENST00000437600 MAFKO60675 156 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 SMNDC1O75940 238 aaKnown RBP eCLIP9.59□□□□□ -0.871e-5■■□□□ 11.9
CUX1-206ENST00000437600 SERPINE1P05121 402 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 HLA-DQB2P05538 268 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 LIMK2P53671 638 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 FAM189BP81408 668 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 SLC10A7Q0GE19 358 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 GALNT2Q10471 571 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 RBBP5Q15291 538 aaKnown RBP9.59□□□□□ -0.87
CUX1-206ENST00000437600 PSMD5Q16401 504 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 CFAP157Q5JU67 520 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 GRTP1Q5TC63 336 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 RNF19BQ6ZMZ0 732 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 FRMD7Q6ZUT3 714 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TRIM74Q86UV6 250 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TRIM73Q86UV7 250 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 HPS6Q86YV9 775 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 ULK2Q8IYT8 1036 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 ATPAF2Q8N5M1 289 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 NAT14Q8WUY8 206 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 STMN2Q93045 179 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 MYEOVQ96EZ4 313 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 UROC1Q96N76 676 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 SMIM14Q96QK8 99 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TLE6Q9H808 572 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 DCLRE1BQ9H816 532 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 NMRK1Q9NWW6 199 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TAGLN3Q9UI15 199 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 AIM2O14862 343 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 SNUPNO95149 360 aaKnown RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 PSMG1O95456 288 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 GSTA2P09210 222 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 SBK3P0C264 359 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 ARL13AQ5H913 290 aaPredicted RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 SPANXN3Q5MJ09 141 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 COL13A1Q5TAT6 717 aaPredicted RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 FUT10Q6P4F1 479 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 CNSTQ6PJW8 725 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 TMPRSS6Q8IU80 811 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 TRIM42Q8IWZ5 723 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 FSTL5Q8N475 847 aaPredicted RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 NTAN1Q96AB6 310 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 HDAC11Q96DB2 347 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 TOX2Q96NM4 488 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 SLC9A7Q96T83 725 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 FSD1LQ9BXM9 530 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 NT5MQ9NPB1 228 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 TLK1Q9UKI8 766 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 HS3ST4Q9Y661 456 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 CDY1Q9Y6F8 540 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 PTPRSQ13332 1948 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 ZBBXA8MT70 800 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 ZNF195O14628 629 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 BIRC5O15392 142 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 CFLARO15519 480 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 IRAK2O43187 625 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 F9P00740 461 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 SLC4A1P02730 911 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 SERPINA6P08185 405 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 TYMPP19971 482 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 MX2P20592 715 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 ARNTP27540 789 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 GRIA4P48058 902 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 CDH17Q12864 832 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 DLG1Q12959 904 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 MAPRE1Q15691 268 aaKnown RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 PDCD2Q16342 344 aaPredicted RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 RBM20Q5T481 1227 aaKnown RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 PDPK2PQ6A1A2 396 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 SMYD5Q6GMV2 418 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 DENND5AQ6IQ26 1287 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 KBTBD2Q8IY47 623 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.58□□□□□ -0.882e-6■■■■■ 29.2
CUX1-206ENST00000437600 BADQ92934 168 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 LENG8Q96PV6 779 aaPredicted RBP9.58□□□□□ -0.88
CUX1-206ENST00000437600 ZDHHC2Q9UIJ5 367 aa9.58□□□□□ -0.88
CUX1-206ENST00000437600 PPM1HQ9ULR3 514 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms