RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NCEH1Q6PIU2 408 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 GDPD4Q6W3E5 623 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 BBS12Q6ZW61 710 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 B4GALNT4Q76KP1 1039 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 ERN2Q76MJ5 926 aaKnown RBP12.64□□□□□ -0.39
SKA1-203ENST00000417656 SRLQ86TD4 932 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 CCDC13Q8IYE1 715 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 BBS5Q8N3I7 341 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 DCLK2Q8N568 766 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 CCNYQ8ND76 341 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 OR14C36Q8NHC7 312 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 SNX19Q92543 992 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 MAML1Q92585 1016 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 RUBCNQ92622 972 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 HES6Q96HZ4 224 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 LRIG1Q96JA1 1093 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 LOXL4Q96JB6 756 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 KLHL32Q96NJ5 620 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 TSGA13Q96PP4 275 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 MGME1Q9BQP7 344 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 OSBPL1AQ9BXW6 950 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 OSBPL8Q9BZF1 889 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 ARRDC1-AS1Q9H2J1 176 aa12.64□□□□□ -0.39
SKA1-203ENST00000417656 PLXNA2O75051 1894 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 KCNK1O00180 336 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 PPP1R12AO14974 1030 aaPredicted RBP12.63□□□□□ -0.39
SKA1-203ENST00000417656 MATN3O15232 486 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 SLC7A4O43246 635 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 FSBPO95073 299 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 CR2P20023 1033 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 ITPKAP23677 461 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 CCNCP24863 283 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 HSPA9P38646 679 aaKnown RBP12.63□□□□□ -0.39
SKA1-203ENST00000417656 ABL2P42684 1182 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 RENBPP51606 427 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 TAS2R38P59533 333 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 PPP2CBP62714 309 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 PPP2CAP67775 309 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 AP1B1Q10567 949 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 PDK1Q15118 436 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 ZNF805Q5CZA5 627 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 LRRC73Q5JTD7 316 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 SPDYCQ5MJ68 293 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 FAM182AQ5T1J6 154 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 CCDC181Q5TID7 509 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 KIAA0895LQ68EN5 471 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 TEX26Q8N6G2 289 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 CADM4Q8NFZ8 388 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 OR2T34Q8NGX1 318 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 PIGKQ92643 395 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 NSMCE3Q96MG7 304 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 HDAC8Q9BY41 377 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 PCED1AQ9H1Q7 454 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 SMOC1Q9H4F8 434 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 NT5MQ9NPB1 228 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 TTLL3Q9Y4R7 772 aa12.63□□□□□ -0.39
SKA1-203ENST00000417656 SDK1Q7Z5N4 2213 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 BCLAF3A2AJT9 711 aaKnown RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 LRRC72A6NJI9 287 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 C16orf96A6NNT2 1141 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 METTL12A8MUP2 240 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 APOC4-APOC2K7ER74 178 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 NEBLO76041 1014 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 APOC2P02655 101 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 HLA-DQB2P05538 268 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 IGHV4-34P06331 123 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 ADRB3P13945 408 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 CCNB1P14635 433 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 MAOBP27338 520 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 CSNK1DP48730 415 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 SCNN1BP51168 640 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 AP1S1P61966 158 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 SPEM2Q0P670 501 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 ZBTB17Q13105 803 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 HNRNPDQ14103 355 aaKnown RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 PRKD1Q15139 912 aaPredicted RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 MEI1Q5TIA1 1274 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 ALYREFQ86V81 257 aaKnown RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 ZC3H18Q86VM9 953 aaKnown RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 CAMK1DQ8IU85 385 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 REXO1L1PQ8IX06 675 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 RGL4Q8IZJ4 473 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 TRIM58Q8NG06 486 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 P3H4Q92791 437 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 FOXJ1Q92949 421 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 FATE1Q969F0 183 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 BIRC7Q96CA5 298 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 QKIQ96PU8 341 aaKnown RBP eCLIP12.62□□□□□ -0.392e-9■■■■■ 48.3
SKA1-203ENST00000417656 NUDCD1Q96RS6 583 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 TUBGCP5Q96RT8 1024 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 CEP41Q9BYV8 373 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 CPEB1Q9BZB8 566 aaKnown RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 ATP13A3Q9H7F0 1226 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 PARD6AQ9NPB6 346 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 RBM22Q9NW64 420 aaKnown RBP eCLIP12.62□□□□□ -0.39
SKA1-203ENST00000417656 SEPT10Q9P0V9 454 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 PYCARDQ9ULZ3 195 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 ITM2BQ9Y287 266 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.62□□□□□ -0.39
SKA1-203ENST00000417656 PCDHGA5Q9Y5G8 931 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms