RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 PPP1R12AO14974 1030 aaPredicted RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 MAFKO60675 156 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 ZRANB2O95218 330 aaKnown RBP eCLIP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 CFIP05156 583 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SYPP08247 313 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SERPINF2P08697 491 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 CCDC175P0C221 793 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TBC1D3HP0C7X1 549 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 ADRB3P13945 408 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SDHBP21912 280 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 XPAP23025 273 aaPredicted RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 CTNNA2P26232 953 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 CD27P26842 260 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SERPINA4P29622 427 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 CTNNA1P35221 906 aaKnown RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 MMP13P45452 471 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 METAP1P53582 386 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 NSUN2Q08J23 767 aaKnown RBP eCLIP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TEAD4Q15561 434 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 CCDC6Q16204 474 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 PPP2R5EQ16537 467 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TFDP3Q5H9I0 405 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 RALGPS1Q5JS13 557 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 MARC1Q5VT66 337 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TBC1D3GQ6DHY5 549 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TBC1D3CQ6IPX1 549 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 NEK5Q6P3R8 708 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SLC23A3Q6PIS1 610 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 MFSD7Q6UXD7 560 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 GDPD4Q6W3E5 623 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SPOCD1Q6ZMY3 1216 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 PRPF39Q86UA1 669 aaKnown RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TRIM69Q86WT6 500 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TP53INP2Q8IXH6 220 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 TBC1D3Q8IZP1 549 aaPredicted RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 RNF10Q8N5U6 811 aaKnown RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 UBL4BQ8N7F7 174 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 EXD1Q8NHP7 514 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 UBE2Q2Q8WVN8 375 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 BIRC7Q96CA5 298 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 EXOC2Q96KP1 924 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 ZNF641Q96N77 438 aaPredicted RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 KLHL32Q96NJ5 620 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 PSKH2Q96QS6 385 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 ATP13A3Q9H7F0 1226 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 DKK3Q9UBP4 350 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 EIF2B4Q9UI10 523 aaKnown RBP11.05□□□□□ -0.64
CHMP3-205ENST00000409810 AMFRQ9UKV5 643 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 SLC6A14Q9UN76 642 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 ADGRG1Q9Y653 693 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 DUSP10Q9Y6W6 482 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 WDR87Q6ZQQ6 2873 aa11.05□□□□□ -0.64
CHMP3-205ENST00000409810 LAMA1P25391 3075 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 A0A1W2PPC4 97 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 GRID2IPA4D2P6 1211 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 C16orf96A6NNT2 1141 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 BCAT2O15382 392 aaPredicted RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 AP1G1O43747 822 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 PCDH8O95206 1070 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 TGM2P21980 687 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 TGM1P22735 817 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 CCNCP24863 283 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 GKP32189 559 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 CDKN2BP42772 138 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 NR2C2P49116 596 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SCNN1BP51168 640 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SUOXP51687 545 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 ATXN3P54252 364 aaPredicted RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 RWDD2BP57060 319 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 COPS2P61201 443 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 AP1S1P61966 158 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 GBE1Q04446 702 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 BCL2L1Q07817 233 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SLC10A7Q0GE19 358 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 HNRNPDQ14103 355 aaKnown RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 PDK1Q15118 436 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SF3A2Q15428 464 aaKnown RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SETMARQ53H47 684 aaPredicted RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 KIAA1161Q6NSJ0 714 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 BRAT1Q6PJG6 821 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 PARS2Q7L3T8 475 aaKnown RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 PEX26Q7Z412 305 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SRLQ86TD4 932 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 CCDC13Q8IYE1 715 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 ZCCHC9Q8N567 271 aaKnown RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 PAF1Q8N7H5 531 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 PLD5Q8N7P1 536 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 TSEN2Q8NCE0 465 aaKnown RBP11.04□□□□□ -0.64
CHMP3-205ENST00000409810 CCNYQ8ND76 341 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 NETO1Q8TDF5 533 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 HCAR2Q8TDS4 363 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 FATE1Q969F0 183 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SKA1Q96BD8 255 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 TSGA13Q96PP4 275 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 MGME1Q9BQP7 344 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 EDEM2Q9BV94 578 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 BRD8Q9H0E9 1235 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SUV39H2Q9H5I1 410 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 SCUBE2Q9NQ36 999 aa11.04□□□□□ -0.64
CHMP3-205ENST00000409810 TMEM74BQ9NUR3 256 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms