RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 S100PBPQ96BU1 408 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 VPS35Q96QK1 796 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 TMEM121Q9BTD3 319 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 MUC3BQ9H195 1237 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 GABBR1Q9UBS5 961 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 RGL2O15211 777 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 TOR4AQ9NXH8 423 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 PCDHA11Q9Y5I1 949 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 CLTCL1P53675 1640 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 I3L521 148 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PPEF2O14830 753 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 CLPXO76031 633 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 FGRP09769 529 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 SLC16A2P36021 539 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 MNDAP41218 407 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ILF3Q12906 894 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF181Q2M3W8 571 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 B3GALNT2Q8NCR0 500 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 COA1Q9GZY4 146 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ALG5Q9Y673 324 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 AFTPHQ6ULP2 937 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PTF1AQ7RTS3 328 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 CIDECQ96AQ7 238 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 TBC1D24Q9ULP9 559 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 OXCT1P55809 520 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF45Q02386 682 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 CYP24A1Q07973 514 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 REXO5Q96IC2 774 aaKnown RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 MGME1Q9BQP7 344 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PSMD11O00231 422 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 SLC18A1P54219 525 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 MED22Q15528 200 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ARHGAP15Q53QZ3 475 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PPP1R15BQ5SWA1 713 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 TBX20Q9UMR3 447 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 GNEQ9Y223 722 aaKnown RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 TRAF6Q9Y4K3 522 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 SLIT1O75093 1534 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 RBM47A0AV96 593 aaKnown RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 LRRC10BA6NIK2 292 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 SUV39H1O43463 412 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ERN1O75460 977 aaKnown RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 SLC2A4P14672 509 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 DCKP27707 260 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ALG11Q2TAA5 492 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PLEKHO2Q8TD55 490 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 DCP1AQ9NPI6 582 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 INTS10Q9NVR2 710 aaKnown RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 SERPINA3P01011 423 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 NKAPQ8N5F7 415 aaKnown RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ADAM32Q8TC27 787 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PDE10AQ9Y233 779 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 PRKCBP05771 671 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 FAM76BQ5HYJ3 339 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 HAGHLQ6PII5 290 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-206ENST00000409809 KBTBD7Q8WVZ9 684 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 LPAR1Q92633 364 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 ITCHQ96J02 903 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 USP21Q9UK80 565 aa12.99□□□□□ -0.33
COL6A3-206ENST00000409809 F5H423 210 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 GRSF1Q12849 480 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 OAFQ86UD1 273 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 GMCL1Q96IK5 515 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 TMEM168Q9H0V1 697 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 GJB6O95452 261 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 TFRCP02786 760 aaKnown RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF548Q8NEK5 533 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 METTL6Q8TCB7 284 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 PRODHO43272 600 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L8P0C7I0 530 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 FAM153CQ494X1 144 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A9O60656 530 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 PRAMEF1O95521 474 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 SERPIND1P05546 499 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 C8BP07358 591 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 VDRP11473 427 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A6P19224 532 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A1P22309 533 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A4P22310 534 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A3P35503 534 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ACCSLQ4AC99 568 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 CMPK2Q5EBM0 449 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF767PQ75MW2 155 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ASCC1Q8N9N2 400 aaKnown RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 DCPSQ96C86 337 aaKnown RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 SLC7A5P2Q9GIP4 190 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UNKLQ9H9P5 680 aaKnown RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A7Q9HAW7 530 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A10Q9HAW8 530 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT1A8Q9HAW9 530 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 IQGAP1P46940 1657 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 GSTT2P0CG29 244 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 DSG3P32926 999 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 SLC15A1P46059 708 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 GLRBP48167 497 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 CBLBQ13191 982 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 PCSK7Q16549 785 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 TKFCQ3LXA3 575 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 SPATA19Q7Z5L4 167 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms