RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TGFB2P61812 414 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CACNB2Q08289 660 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 DLG1Q12959 904 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 AUHQ13825 339 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 DDX39BQ13838 428 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CCL15Q16663 113 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CERS6Q6ZMG9 384 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 KDELC2Q7Z4H8 507 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PACRGLQ8N7B6 248 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 ATG4AQ8WYN0 398 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 ZKSCAN4Q969J2 545 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 MKL1Q969V6 931 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 ATG4CQ96DT6 458 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CLCC1Q96S66 551 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 EBNA1BP2Q99848 306 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 RBM4BQ9BQ04 359 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 RBM4Q9BWF3 364 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 NUSAP1Q9BXS6 441 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 EXD2Q9NVH0 621 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 INTS7Q9NVH2 962 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 C14orf105Q9NVL8 296 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PFDN2Q9UHV9 154 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 TAF6LQ9Y6J9 622 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 DDX3XO00571 662 aaKnown RBP eCLIP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SIN3BO75182 1162 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 MICAL2O94851 1124 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 OR6B1O95007 311 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SCELO95171 688 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 IFNA16P05015 189 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SRPRAP08240 638 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CCDC166P0CW27 439 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 TOB1P50616 345 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 HUNKP57058 714 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 ELP6Q0PNE2 266 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 ATP13A4Q4VNC1 1196 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 GNASQ5JWF2 1037 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SLC25A24Q6NUK1 477 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PAMR1Q6UXH9 720 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 BEND5Q7L4P6 421 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 ZFPM1Q8IX07 1006 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 FAM71AQ8IYT1 594 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 RASGEF1CQ8N431 466 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 C9orf43Q8TAL5 461 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SYTL5Q8TDW5 730 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 MTMR8Q96EF0 704 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CHID1Q9BWS9 393 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 FTHL17Q9BXU8 183 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 HHATLQ9HCP6 504 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 POLR1DQ9Y2S0 133 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 TRPV2Q9Y5S1 764 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 DHRS12A0PJE2 317 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 LRRC14BA6NHZ5 514 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 TTLL13PA6NNM8 815 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 C1QTNF3-AMACRE9PGA6 284 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 MDM4O15151 490 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PGRMC2O15173 223 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PARNO95453 639 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 POLR2EP19388 210 aaKnown RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 KELP23276 732 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 MGAT1P26572 445 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 KLK7P49862 253 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 IRF8Q02556 426 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 FAAP100Q0VG06 881 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 BIKQ13323 160 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 DPY19L1Q2PZI1 675 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 KLHL35Q6PF15 583 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 GPR180Q86V85 440 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SYTL1Q8IYJ3 562 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CARNMT1Q8N4J0 409 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 LINC00471Q8N535 108 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 BHLHE22Q8NFJ8 381 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-203ENST00000409050 TEX47Q8TBZ9 253 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 IRGQQ8WZA9 623 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PI4K2AQ9BTU6 479 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 POLR1BQ9H9Y6 1135 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CDHR5Q9HBB8 845 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 IL1RAPQ9NPH3 570 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 NUDT5Q9UKK9 219 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 SALL3Q9BXA9 1300 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 PIGBOS1A0A0B4J2F0 54 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 AP3D1O14617 1153 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 EDF1O60869 148 aaKnown RBP6.15□□□□□ -1.43
SCN1A-203ENST00000409050 ULK1O75385 1050 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 STAU1O95793 577 aaKnown RBP6.15□□□□□ -1.43
SCN1A-203ENST00000409050 PEPDP12955 493 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 RGS1Q08116 209 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 FOXD4Q12950 439 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-203ENST00000409050 GALNT3Q14435 633 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 FGD3Q5JSP0 725 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 HYIQ5T013 277 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 ATXN7L2Q5T6C5 722 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-203ENST00000409050 FAM46CQ5VWP2 391 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 KLHL24Q6TFL4 600 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-203ENST00000409050 GPRIN3Q6ZVF9 776 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 OFCC1Q8IZS5 231 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 SCAIQ8N9R8 606 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 TRPV3Q8NET8 790 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 LPCAT1Q8NF37 534 aa6.15□□□□□ -1.43
SCN1A-203ENST00000409050 NEDD4LQ96PU5 975 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms