RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 WDR6Q9NNW5 1121 aaKnown RBP9.4□□□□□ -0.91
COL28A1-201ENST00000399429 C12orf4Q9NQ89 552 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 SMOXQ9NWM0 555 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 COMMD8Q9NX08 183 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 PDE10AQ9Y233 779 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 ASTN2O75129 1339 aaPredicted RBP9.4□□□□□ -0.91
COL28A1-201ENST00000399429 NCF1BA6NI72 391 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 NCF1CA8MVU1 366 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 LOC110117498-PIK3R3F6TDL0 507 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 AQP9O43315 295 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ADAM23O75077 832 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 DHRS4L1P0CG22 281 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 NCF1P14598 390 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 HDCP19113 662 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PRKACBP22694 351 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CCR10P46092 362 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 GALNT12Q8IXK2 581 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ADGRF2Q8IZF7 708 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ASCC1Q8N9N2 400 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ENKURQ8TC29 256 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 FEM1AQ9BSK4 669 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 MID1IP1Q9NPA3 183 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ANKEF1Q9NU02 776 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM9Q9P0T7 183 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 COPG1Q9Y678 874 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM233B4DJY2 109 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SUPT3HB4E1H0 165 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 EEF2KO00418 725 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CABYRO75952 493 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF682O95780 498 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 MTHFD1P11586 935 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 NCAM1P13591 858 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ELK4P28324 431 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CDH13P55290 713 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 GNG2P59768 71 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PIGFQ07326 219 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PCLAFQ15004 111 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CA9Q16790 459 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 INSCQ1MX18 579 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TKFCQ3LXA3 575 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ATAD3BQ5T9A4 648 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CYP2U1Q7Z449 544 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SCUBE3Q8IX30 993 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 MINDY2Q8NBR6 621 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 BHMTQ93088 406 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SNX9Q9Y5X1 595 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 A0A0J9YYE9 177 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 FAM189A1O60320 539 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 RECQL5O94762 991 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PRKD3O94806 890 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TOMM70O94826 608 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 IL7RP16871 459 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 AZGP1P25311 298 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SHMT1P34896 483 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 OR2B6P58173 313 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PTPN11Q06124 597 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PPP1R8Q12972 351 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 BTG3Q14201 252 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 KIZQ2M2Z5 673 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ARL13BQ3SXY8 428 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SPANXN3Q5MJ09 141 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 NANOGP8Q6NSW7 305 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 EPGNQ6UW88 154 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC149Q6ZUS6 474 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 EFL1Q7Z2Z2 1120 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM126BQ8IUX1 230 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CPNE9Q8IYJ1 553 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 UBE2J2Q8N2K1 259 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC126Q96EE4 140 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM246Q9BRR3 403 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TSEN34Q9BSV6 310 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF341Q9BYN7 854 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ARHGEF4Q9NR80 690 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SFMBT1Q9UHJ3 866 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 EFCAB10A6NFE3 127 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC154A6NI56 674 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SNTNA6NMZ2 147 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SOCS2O14508 198 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ITGB3P05106 788 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 THRBP10828 461 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 IL1R2P27930 398 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 MZF1P28698 734 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 HPCAL1P37235 193 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CCT8P50990 548 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 AKR1D1P51857 326 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 HSPA2P54652 639 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SIM2Q14190 667 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TRIP4Q15650 581 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TYSND1Q2T9J0 566 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 GOLGA7BQ2TAP0 167 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PDZK1Q5T2W1 519 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ZCCHC8Q6NZY4 707 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TBC1D21Q8IYX1 336 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CENPLQ8N0S6 344 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 PNPT1Q8TCS8 783 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 SKA2Q8WVK7 121 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 APOL4Q9BPW4 351 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 TEX13BQ9BXU2 312 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF717Q9BY31 904 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 MAGEE1Q9HCI5 957 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms