RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 FBXO16Q8IX29 292 aaPredicted RBP21.37■■□□□ 1.01
UPF3A-202ENST00000375299 FAM47BQ8NA70 645 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 SMYD1Q8NB12 490 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 MRPL46Q9H2W6 279 aaKnown RBP21.37■■□□□ 1.01
UPF3A-202ENST00000375299 HACD3Q9P035 362 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 TRHDEQ9UKU6 1024 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 STAP1Q9ULZ2 295 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 FAM72CH0Y354 149 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 LMO2P25791 158 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 EPHX2P34913 555 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 ENTPD1P49961 510 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CDH17Q12864 832 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 SFSWAPQ12872 951 aaKnown RBP21.36■■□□□ 1.01
UPF3A-202ENST00000375299 KCTD21Q4G0X4 260 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 AGKQ53H12 422 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 FAM72AQ5TYM5 149 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 FAM72DQ6L9T8 149 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 Q6ZNX1 250 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 PIGZQ86VD9 579 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 FAM72BQ86X60 149 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CLVS1Q8IUQ0 354 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-202ENST00000375299 LZTR1Q8N653 840 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 TXNDC5Q8NBS9 432 aaKnown RBP21.36■■□□□ 1.01
UPF3A-202ENST00000375299 KIFC1Q9BW19 673 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 POMKQ9H5K3 350 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 FIS1Q9Y3D6 152 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 TSC2P49815 1807 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 SBF1O95248 1867 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 POLR2AP24928 1970 aaKnown RBP21.36■■□□□ 1.01
UPF3A-202ENST00000375299 TRIM64CA6NLI5 447 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 PSMD12O00232 456 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-202ENST00000375299 NCAM2O15394 837 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CNMDO75829 334 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CKMT2P17540 419 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 PPIL2Q13356 520 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 UGP2Q16851 508 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CEP97Q8IW35 865 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 BEST2Q8NFU1 509 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 TFAP2CQ92754 450 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 PPWD1Q96BP3 646 aaKnown RBP21.36■■□□□ 1.01
UPF3A-202ENST00000375299 ISOC1Q96CN7 298 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 OSBPL2Q9H1P3 480 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 PIGVQ9NUD9 493 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CCDC167Q9P0B6 97 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 EBF1Q9UH73 591 aa21.36■■□□□ 1.01
UPF3A-202ENST00000375299 CROCCQ5TZA2 2017 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 MCM3APO60318 1980 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 A0A087WXM4 84 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 SOCS2O14508 198 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 MTSS1O43312 755 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 TIPRLO75663 272 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 SRP72O76094 671 aaKnown RBP21.35■■□□□ 1.01
UPF3A-202ENST00000375299 STMN1P16949 149 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 HDCP19113 662 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 GNL1P36915 607 aaPredicted RBP21.35■■□□□ 1.01
UPF3A-202ENST00000375299 DNAJB13P59910 316 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 ESRRGP62508 458 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 SAMD4BQ5PRF9 694 aaKnown RBP21.35■■□□□ 1.01
UPF3A-202ENST00000375299 NAPEPLDQ6IQ20 393 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 PATL1Q86TB9 770 aaKnown RBP21.35■■□□□ 1.01
UPF3A-202ENST00000375299 GPR180Q86V85 440 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 SPATA6LQ8N4H0 392 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 WNT8BQ93098 351 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 C18orf25Q96B23 403 aaPredicted RBP21.35■■□□□ 1.01
UPF3A-202ENST00000375299 UNKQ9C0B0 810 aaKnown RBP21.35■■□□□ 1.01
UPF3A-202ENST00000375299 PLEKHA5Q9HAU0 1116 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 SNTG2Q9NY99 539 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 TMEM181Q9P2C4 612 aa21.35■■□□□ 1.01
UPF3A-202ENST00000375299 FAM95CA0A1B0GW59 222 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 ZNF839A8K0R7 811 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 MRASO14807 208 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 UBDO15205 165 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 ATP6V1G1O75348 118 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 SNRPB2P08579 225 aaKnown RBP21.34■■□□□ 1.01
UPF3A-202ENST00000375299 HNRNPLP14866 589 aaKnown RBP eCLIP21.34■■□□□ 1.01
UPF3A-202ENST00000375299 ARSAP15289 507 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 POLD2P49005 469 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 TPI1P60174 286 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 MPP1Q00013 466 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 PRKCQQ04759 706 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 ZBED5Q49AG3 693 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 FAM45BPQ6NSW5 357 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 NPWQ8N729 165 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 FAM45AQ8TCE6 357 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 HDAC11Q96DB2 347 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 FAR2Q96K12 515 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 SNX27Q96L92 541 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 TCF12Q99081 682 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 MEAF6Q9HAF1 191 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 UBP1Q9NZI7 540 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 CROTQ9UKG9 612 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 ZNF701M0R085 212 aaPredicted RBP21.34■■□□□ 1.01
UPF3A-202ENST00000375299 AP3B1O00203 1094 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 BMP2P12643 396 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 TKTP29401 623 aaKnown RBP21.34■■□□□ 1.01
UPF3A-202ENST00000375299 PRAMEP78395 509 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 ZBTB6Q15916 424 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 SYPL2Q5VXT5 272 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 C9orf57Q5W0N0 161 aa21.34■■□□□ 1.01
UPF3A-202ENST00000375299 MFSD6LQ8IWD5 586 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms