RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MIPP30301 263 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 NDST2P52849 883 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 UBASH3AP57075 661 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 RHOAP61586 193 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 MAPK8IP2Q13387 824 aaPredicted RBP22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 CYTH1Q15438 398 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 HGSNATQ68CP4 663 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 GDPD4Q6W3E5 623 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 CYP4V2Q6ZWL3 525 aaPredicted RBP22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 NETO2Q8NC67 525 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 SYN2Q92777 582 aaPredicted RBP22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 BMFQ96LC9 184 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 C1QTNF2Q9BXJ5 285 aa22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 BZW2Q9Y6E2 419 aaKnown RBP22.01■■□□□ 1.11
CCDC28B-201ENST00000373602 A6NNZ2 444 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 AREL1O15033 823 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 RAD51BO15315 384 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 SPINT1O43278 529 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 PRPSAP2O60256 369 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 DNAJC3Q13217 504 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 SMAD1Q15797 465 aaKnown RBP22■■□□□ 1.11
CCDC28B-201ENST00000373602 CCDC157Q569K6 752 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 PSTKQ8IV42 348 aaKnown RBP22■■□□□ 1.11
CCDC28B-201ENST00000373602 SLC22A18ASQ8N1D0 253 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 GALNT15Q8N3T1 639 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 ASB12Q8WXK4 309 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 ARHGEF26Q96DR7 871 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 LENG8Q96PV6 779 aaPredicted RBP22■■□□□ 1.11
CCDC28B-201ENST00000373602 KCTD15Q96SI1 283 aaPredicted RBP22■■□□□ 1.11
CCDC28B-201ENST00000373602 NCAPGQ9BPX3 1015 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 CALN1Q9BXU9 219 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 PDFQ9HBH1 243 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 MRPL47Q9HD33 250 aaKnown RBP22■■□□□ 1.11
CCDC28B-201ENST00000373602 GPR27Q9NS67 375 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 MYO1AQ9UBC5 1043 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 LHX3Q9UBR4 397 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 UBA2Q9UBT2 640 aaPredicted RBP22■■□□□ 1.11
CCDC28B-201ENST00000373602 GGT7Q9UJ14 662 aa22■■□□□ 1.11
CCDC28B-201ENST00000373602 AKAP13Q12802 2813 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 IGLON5A6NGN9 336 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 NEMP1O14524 444 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 SDC3O75056 442 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 LRCH4O75427 683 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 C1SP09871 688 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 DHRS13Q6UX07 377 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 KYAT3Q6YP21 454 aaKnown RBP21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 Q6ZSR6 202 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 RFX8Q6ZV50 586 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 DCP2Q8IU60 420 aaKnown RBP21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 SLC25A45Q8N413 288 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 TSC1Q92574 1164 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 IFT43Q96FT9 208 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 CELF6Q96J87 481 aaKnown RBP21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 KLF6Q99612 283 aaPredicted RBP21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 CPEB1Q9BZB8 566 aaKnown RBP21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 SLC39A8Q9C0K1 460 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 DKK3Q9UBP4 350 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 ITM2BQ9Y287 266 aa21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 ARID1BQ8NFD5 2236 aaPredicted RBP21.99■■□□□ 1.11
CCDC28B-201ENST00000373602 POM121BA6NF01 834 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 J3KR12 359 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 INSIG1O15503 277 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 PRAMEF11O60813 436 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 CDK4P11802 303 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 HCAR3P49019 387 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 ACADVLP49748 655 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 ZNF135P52742 658 aaPredicted RBP21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 SGCGQ13326 291 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 TDRD12Q587J7 1177 aaKnown RBP21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 AFMIDQ63HM1 303 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 PTAR1Q7Z6K3 402 aaPredicted RBP21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 TTC7BQ86TV6 843 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 IQCDQ96DY2 449 aa21.98■■□□□ 1.11
CCDC28B-201ENST00000373602 ARHGAP42A6NI28 874 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 SRRM3A6NNA2 597 aaPredicted RBP21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 GOLGA6L19H0YKK7 550 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 DAPK3O43293 454 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 RFPL3O75679 317 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 TIMP2P16035 220 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 ERCC2P18074 760 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 PTMSP20962 102 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 DGKAP23743 735 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 PCK1P35558 622 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 PAPOLAP51003 745 aaKnown RBP21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 ZBED6P86452 979 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 ACAP1Q15027 740 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 PPP6R3Q5H9R7 873 aaPredicted RBP21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 ARHGAP12Q8IWW6 846 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 DENND6BQ8NEG7 585 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 EXOC2Q96KP1 924 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 CAPN11Q9UMQ6 739 aa21.97■■□□□ 1.11
CCDC28B-201ENST00000373602 TAF4O00268 1085 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 TRIM38O00635 465 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 FPGTO14772 594 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 PIAS2O75928 621 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 SERPING1P05155 500 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 CKMT2P17540 419 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 RABIFP47224 123 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 ZNF211Q13398 564 aaPredicted RBP21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 GRM3Q14832 879 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms