RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CCDC162PA2VCL2 907 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 CCDC182A6NF36 153 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SRRM3A6NNA2 597 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 GTPBP1O00178 669 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 LGALS2P05162 132 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 OMPP47874 163 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 EIF2B2P49770 351 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 TOB1P50616 345 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ACLYP53396 1101 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 MARSP56192 900 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ABRAXAS1Q6UWZ7 409 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 FAM92BQ6ZTR7 304 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SCUBE3Q8IX30 993 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 BEND7Q8N7W2 519 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ETNPPLQ8TBG4 499 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 STK32AQ8WU08 396 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 CRELD1Q96HD1 420 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PGLYRP2Q96PD5 576 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PAIP1Q9H074 479 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 RHBGQ9H310 441 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 OR12D3Q9UGF7 316 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 RPTORQ8N122 1335 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 E5RJQ4 531 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 NR2F1P10589 423 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PCSK2P16519 638 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ATP4AP20648 1035 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 FAUP35544 74 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 SMCO1Q147U7 214 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 NBPF12Q5TAG4 269 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 NT5DC1Q5TFE4 455 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 FAM171BQ6P995 826 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SLC30A10Q6XR72 485 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 OAFQ86UD1 273 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 RIOX2Q8IUF8 465 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 QKIQ96PU8 341 aaKnown RBP eCLIP6.52□□□□□ -1.372e-13■■■■■ 45.4
UPF2-201ENST00000356352 VPS35Q96QK1 796 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ZNF184Q99676 751 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ZNF670Q9BS34 389 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 FNDC11Q9BVV2 318 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 KCNN2Q9H2S1 579 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 PTGFRNQ9P2B2 879 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 TRPS1Q9UHF7 1281 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 GMPPBQ9Y5P6 360 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 IRAK3Q9Y616 596 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 NWD1Q149M9 1564 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 FAM205AQ6ZU69 1335 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 MCIDASD6RGH6 385 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 CACNB4O00305 520 aaPredicted RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 TRIM38O00635 465 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 ULK1O75385 1050 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 KHDRBS3O75525 346 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ADH1CP00326 375 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 MT-CO1P00395 513 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 CYP1A2P05177 515 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 GLI1P08151 1106 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 RARAP10276 462 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 EPORP19235 508 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 RBL1P28749 1068 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SLC26A3P40879 764 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 AP5B1Q2VPB7 878 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 OR8D1Q8WZ84 308 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 CEP41Q9BYV8 373 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 IGFLR1Q9H665 355 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 NOL6Q9H6R4 1146 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ALG9Q9H6U8 611 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SMURF2Q9HAU4 748 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 CYLDQ9NQC7 956 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 SEMA3GQ9NS98 782 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 RSL24D1Q9UHA3 163 aaKnown RBP6.52□□□□□ -1.37
UPF2-201ENST00000356352 ST3GAL5Q9UNP4 418 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 DUSP10Q9Y6W6 482 aa6.52□□□□□ -1.37
UPF2-201ENST00000356352 BBIP1A8MTZ0 92 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 MAGEB3O15480 346 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 PSMG1O95456 288 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 LYNP07948 512 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 SLC35G4P0C7Q5 338 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 SHMT1P34896 483 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 CD86P42081 329 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 TRAP1Q12931 704 aaKnown RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 QPRTQ15274 297 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 MAPKAPK3Q16644 382 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 PFKFB4Q16877 469 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 RFTN2Q52LD8 501 aaPredicted RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 CELF3Q5SZQ8 465 aaKnown RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 DNAJC14Q6Y2X3 702 aaPredicted RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 GPRIN3Q6ZVF9 776 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 PTGR2Q8N8N7 351 aaPredicted RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 KIAA0895Q8NCT3 520 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 OR7A2PQ8NGA2 310 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 PHF10Q8WUB8 498 aaKnown RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 MTFMTQ96DP5 389 aaKnown RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 MCRS1Q96EZ8 462 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 CERS2Q96G23 380 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 BTBD9Q96Q07 612 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 ADAM2Q99965 735 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 UNKQ9C0B0 810 aaKnown RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 PPIEQ9UNP9 301 aaKnown RBP6.51□□□□□ -1.37
UPF2-201ENST00000356352 COG5Q9UP83 839 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 SLC12A4Q9UP95 1085 aa6.51□□□□□ -1.37
UPF2-201ENST00000356352 N6AMT1Q9Y5N5 214 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms