RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 FGD3Q5JSP0 725 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CELF3Q5SZQ8 465 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 RBM20Q5T481 1227 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 ARHGAP36Q6ZRI8 547 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 TMEM26Q6ZUK4 368 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 GPR141Q7Z602 305 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 LDB1Q86U70 411 aaPredicted RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CPSF7Q8N684 471 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 STYXQ8WUJ0 223 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 HEXDCQ8WVB3 486 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 FAM49AQ9H0Q0 323 aaPredicted RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 VRTNQ9H8Y1 702 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 THEGQ9P2T0 379 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 ADAM28Q9UKQ2 775 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 GMEB1Q9Y692 573 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 LCTP09848 1927 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 RNF103-CHMP3A0A140T963 221 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 FAM95CA0A1B0GW59 222 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 BTBD19C9JJ37 291 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 B4GAT1O43505 415 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 TADA2AO75478 443 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 FAM163BP0C2L3 166 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 HSPA13P48723 471 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CDH13P55290 713 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 TXNL4AP83876 142 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 SULT2A1Q06520 285 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 BNIP3Q12983 259 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 NAB1Q13506 487 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 SEPT6Q14141 434 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 USP41Q3LFD5 358 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 GADL1Q6ZQY3 521 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 PATL1Q86TB9 770 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 SPPL2BQ8TCT7 592 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 EDEM1Q92611 657 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 THAP11Q96EK4 314 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 OSBPL11Q9BXB4 747 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 EIF2B3Q9NR50 452 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 PNPLA3Q9NST1 481 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 IGSF9Q9P2J2 1179 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 KIAA1257Q9ULG3 409 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 RLFQ13129 1914 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 PHIPQ8WWQ0 1821 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 NR4A1P22736 598 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CHRNA4P43681 627 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 C6orf10Q5SRN2 563 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 ARHGAP17Q68EM7 881 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 SETD3Q86TU7 594 aaPredicted RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 GPR22Q99680 433 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CLK4Q9HAZ1 481 aaKnown RBP10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CDHR5Q9HBB8 845 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 PFDN4Q9NQP4 134 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 CIDEBQ9UHD4 219 aa10.24□□□□□ -0.77
PTPRA-203ENST00000356147 MCM3APO60318 1980 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 PPP6CO00743 305 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 UBDO15205 165 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 TSPAN1O60635 241 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 COL6A2P12110 1019 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 NCAM1P13591 858 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 CYP2B6P20813 491 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 TPI1P60174 286 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 CD300CQ08708 224 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 PMS2P3Q13401 168 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 LRP8Q14114 963 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 MAP7D1Q3KQU3 841 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SLC25A52Q3SY17 297 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SLC44A4Q53GD3 710 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 LDLRAP1Q5SW96 308 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 BORAQ6PGQ7 559 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 CNTD1Q8N815 330 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SMYD1Q8NB12 490 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 ANKRD52Q8NB46 1076 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 ISL2Q96A47 359 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 OSBPL6Q9BZF3 934 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 UNC93B1Q9H1C4 597 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 CASS4Q9NQ75 786 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 DSEQ9UL01 958 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 NR5A2O00482 541 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SOCS7O14512 581 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 PMPCBO75439 489 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 MTHFD1P11586 935 aaKnown RBP10.23□□□□□ -0.77
PTPRA-203ENST00000356147 OXTRP30559 389 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 BCAT1P54687 386 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 TNFAIP2Q03169 654 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SLC12A1Q13621 1099 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 NHSL2Q5HYW2 709 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 TBCELQ5QJ74 424 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 DCAF15Q66K64 600 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 ZNF470Q6ECI4 717 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 MAMDC4Q6UXC1 1216 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 RETREG3Q86VR2 466 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 DHFR2Q86XF0 187 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 FLAD1Q8NFF5 587 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SH3RF2Q8TEC5 729 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 DCPSQ96C86 337 aaKnown RBP10.23□□□□□ -0.77
PTPRA-203ENST00000356147 CAMKK2Q96RR4 588 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 IL22Q9GZX6 179 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 SPATC1LQ9H0A9 340 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 NXF3Q9H4D5 531 aaKnown RBP10.23□□□□□ -0.77
PTPRA-203ENST00000356147 RHOJQ9H4E5 214 aa10.23□□□□□ -0.77
PTPRA-203ENST00000356147 VPS28Q9UK41 221 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms