RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DLX3O60479 287 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 TM7SF2O76062 418 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 RPL17P18621 184 aaKnown RBP10.46□□□□□ -0.74
LIMA1-201ENST00000341247 ABL2P42684 1182 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 EIF4EBP2Q13542 120 aaPredicted RBP10.46□□□□□ -0.74
LIMA1-201ENST00000341247 SLC12A1Q13621 1099 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 TCTN1Q2MV58 587 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 RASIP1Q5U651 963 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 MARC1Q5VT66 337 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 FBXL22Q6P050 247 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 RYBPQ8N488 228 aaPredicted RBP10.46□□□□□ -0.74
LIMA1-201ENST00000341247 SNX31Q8N9S9 440 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 PHF21BQ96EK2 531 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 UROC1Q96N76 676 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 TCF7L2Q9NQB0 619 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 PCDHB5Q9Y5E4 795 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 CDY1Q9Y6F8 540 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 MYLKQ15746 1914 aa10.46□□□□□ -0.74
LIMA1-201ENST00000341247 CYP2C18P33260 490 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ARCN1P48444 511 aaKnown RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 CDK7P50613 346 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 RAB10P61026 200 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 DUSP4Q13115 394 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 RSPO2Q6UXX9 243 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 LRRC74BQ6ZQY2 392 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 HPS6Q86YV9 775 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 LZTR1Q8N653 840 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 RNF148Q8N7C7 305 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 BLOC1S5Q8TDH9 187 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 SLC26A7Q8TE54 656 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 HEXDCQ8WVB3 486 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 LENG8Q96PV6 779 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 TRIM62Q9BVG3 475 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 C1QTNF1Q9BXJ1 281 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ZCWPW1Q9H0M4 648 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ENTPD7Q9NQZ7 604 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 GTSE1Q9NYZ3 720 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 MARCH2Q9P0N8 246 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 UXTQ9UBK9 157 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 TLL2Q9Y6L7 1015 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 A0A088AWK7 358 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 CFLARO15519 480 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 KLHL2O95198 593 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 AOC1P19801 751 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 YWHAQP27348 245 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 CPOXP36551 454 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 KCNQ1P51787 676 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 SLC34A1Q06495 639 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 DNAL1Q4LDG9 190 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 PRSS55Q6UWB4 352 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 RPAINQ86UA6 219 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 TMEM173Q86WV6 379 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 SH3RF2Q8TEC5 729 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 EXOC2Q96KP1 924 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 RGS18Q9NS28 235 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 DNAJC28Q9NX36 388 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 PPM1HQ9ULR3 514 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 FRMPD3Q5JV73 1810 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 LMNAP02545 664 aaKnown RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ADRA1AP35348 466 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 CD151P48509 253 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ARSDP51689 593 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF135P52742 658 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 GALNT3Q14435 633 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 LIPMQ5VYY2 423 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 TIGD7Q6NT04 549 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-201ENST00000341247 RANBP10Q6VN20 620 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 TMEM151AQ8N4L1 468 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 DBF4BQ8NFT6 615 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 CD99L2Q8TCZ2 262 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ISL2Q96A47 359 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 OLFM1Q99784 485 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 ZYG11BQ9C0D3 744 aa10.45□□□□□ -0.74
LIMA1-201ENST00000341247 NYNRINQ9P2P1 1898 aaKnown RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 PSMD3O43242 534 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TRPA1O75762 1119 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SKIP12755 728 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TFEBP19484 476 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 OR1E1P30953 314 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 VHLP40337 213 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TM4SF4P48230 202 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 GPNMBQ14956 572 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TSNAXIP1Q2TAA8 658 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 LSM12Q3MHD2 195 aaKnown RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SEL1L3Q68CR1 1132 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 EPGNQ6UW88 154 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 ZYG11AQ6WRX3 759 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 RNF19BQ6ZMZ0 732 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 HDAC10Q969S8 669 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SPON2Q9BUD6 331 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 STARD7Q9NQZ5 370 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SCML2Q9UQR0 700 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TLR6Q9Y2C9 796 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SSX2IPQ9Y2D8 614 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 MAGEC1O60732 1142 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 KCNA5P22460 613 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 RPL14P50914 215 aaKnown RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 DSC1Q08554 894 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 KLF10Q13118 480 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms