RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TSHZ1Q6ZSZ6 1077 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 EEF1AKMT1Q8WVE0 214 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 KAT5Q92993 513 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.73□□□□□ -0.372e-6■■□□□ 11.5
SDC3-201ENST00000336798 PNMA8CA0A1B0GUJ8 204 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 TRIM3O75382 744 aaPredicted RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 ZBTB11O95625 1053 aaPredicted RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 MADCAM1Q13477 382 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 FAM187BQ17R55 369 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ALG11Q2TAA5 492 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 TRMT5Q32P41 509 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 WDR59Q6PJI9 974 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 KRT74Q7RTS7 529 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 EQTNQ9NQ60 294 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 E7ENQ6 273 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 BIRC5O15392 142 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 GUCY1B2O75343 617 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 TOP3BO95985 862 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 CATP04040 527 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 PSMD4P55036 377 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 DGKZQ13574 1117 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 FRG1Q14331 258 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 EARS2Q5JPH6 523 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 STXBP5Q5T5C0 1151 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 WDR93Q6P2C0 686 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 NYAP1Q6ZVC0 841 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 KIAA0319LQ8IZA0 1049 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 NDUFA13Q9P0J0 144 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 TULP4Q9NRJ4 1543 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 MGRN1O60291 552 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 CCNYL3P0C7X3 344 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 USP46P62068 366 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 SPIBQ01892 262 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ZDHHC17Q8IUH5 632 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 DAW1Q8N136 415 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 FAM98AQ8NCA5 519 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 ZNF558Q96NG5 402 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ABHD16BQ9H3Z7 469 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 CERS4Q9HA82 394 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 EML1O00423 815 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 PDE9AO76083 593 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ROR2Q01974 943 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 SLC34A1Q06495 639 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 PLPP4Q5VZY2 271 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ELOA2Q8IYF1 753 aaPredicted RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 TRNT1Q96Q11 434 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 PLA2R1Q13018 1463 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 SCGNO76038 276 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 GJB1P08034 283 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 HECTD3Q5T447 861 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 FAM151BQ6UXP7 276 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 LRRC49Q8IUZ0 686 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 CDYL2Q8N8U2 506 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ITFG2Q969R8 447 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 IKZF3Q9UKT9 509 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 VPS4BO75351 444 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 S100A9P06702 114 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 DBTP11182 482 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 GSTT1P30711 240 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 SHMT1P34896 483 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 RPL14P50914 215 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 ITGA1P56199 1179 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 MOXD1Q6UVY6 613 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 OTOP1Q7RTM1 612 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 LENG9Q96B70 501 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 MCRS1Q96EZ8 462 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 TINF2Q9BSI4 451 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 C9orf16Q9BUW7 83 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 BRD9Q9H8M2 597 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ATAD3AQ9NVI7 634 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 GMEB1Q9Y692 573 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 FAM237BA0A1B0GVD1 139 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 OR5F1O95221 314 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ECDO95905 644 aaPredicted RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 SLC25A3Q00325 362 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 SUZ12Q15022 739 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 NEPROQ6NW34 567 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 CFAP52Q8N1V2 620 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 GPC6Q9Y625 555 aaPredicted RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 SGTAO43765 313 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 LTA4HP09960 611 aaKnown RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 AKR1D1P51857 326 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 PTPN5P54829 565 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ARPC4P59998 168 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 RFX4Q33E94 735 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 INO80DQ53TQ3 878 aaPredicted RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 SLC45A4Q5BKX6 768 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 UNC5AQ6ZN44 842 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ARHGAP36Q6ZRI8 547 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 TMC3Q7Z5M5 1100 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 TAF8Q7Z7C8 310 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ZFPM1Q8IX07 1006 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 C8orf59Q8N0T1 100 aaPredicted RBP12.72□□□□□ -0.37
SDC3-201ENST00000336798 OR4A15Q8NGL6 344 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 ZNF563Q8TA94 476 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 MYLPFQ96A32 169 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 FEM1CQ96JP0 617 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 OSER1Q9NX31 292 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 RRN3Q9NYV6 651 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms