RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 COX4I1P13073 169 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CD58P19256 250 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ADSSP30520 456 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SLC16A2P36021 539 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PTPN9P43378 593 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 MAZP56270 477 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 HPCAP84074 193 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNF699Q32M78 642 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SGO1Q5FBB7 561 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TTC23Q5W5X9 447 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PDPK2PQ6A1A2 396 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CGB2Q6NT52 195 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNF615Q8N8J6 731 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 FNDC8Q8TC99 324 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ING5Q8WYH8 240 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SH2D3AQ9BRG2 576 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 FAIMQ9NVQ4 179 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 INTS10Q9NVR2 710 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 FNIP2Q9P278 1114 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNRF3Q9ULT6 936 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ABCG2Q9UNQ0 655 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 RUVBL2Q9Y230 463 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 CACNA1SQ13698 1873 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CAPN14A8MX76 684 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PAPSS1O43252 624 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 BGNP21810 368 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PMF1Q6P1K2 205 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 C3orf67Q6ZVT6 689 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SLC47A2Q86VL8 602 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 CPXCR1Q8N123 301 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ATG4AQ8WYN0 398 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PPP1R16BQ96T49 567 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 HOPXQ9BPY8 73 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 PDZD7Q9H5P4 517 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 RETREG1Q9H6L5 497 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SLCO1B3Q9NPD5 702 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 FBXO28Q9NVF7 368 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 CDH22Q9UJ99 828 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 TRMT6Q9UJA5 497 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 N6AMT1Q9Y5N5 214 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 HEATR9A2RTY3 570 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 CCRL2O00421 344 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 HMGB3O15347 200 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 ATP6V1G1O75348 118 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SUPT7LO94864 414 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 LSM3P62310 102 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 YWHAZP63104 245 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 PURAQ00577 322 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 GALNT1Q10472 559 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 IL18R1Q13478 541 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ADGRE1Q14246 886 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ZBED5Q49AG3 693 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 NIM1KQ8IY84 436 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ZNF671Q8TAW3 534 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 AIF1LQ9BQI0 150 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ZSCAN5AQ9BUG6 496 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 AGO4Q9HCK5 861 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 SUCOQ9UBS9 1254 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 AP4B1Q9Y6B7 739 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 VWA5AO00534 786 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 GPIP06744 558 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ITGALP20701 1170 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 NME5P56597 212 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ACTR2P61160 394 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PSME3P61289 254 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 MPP1Q00013 466 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 DLG1Q12959 904 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 C11orf96Q7Z7L8 435 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PARP8Q8N3A8 854 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SLC25A41Q8N5S1 370 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 TBC1D19Q8N5T2 526 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SNX31Q8N9S9 440 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 HTRA1Q92743 480 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 NACC2Q96BF6 587 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 NUAK2Q9H093 628 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 UNC93B1Q9H1C4 597 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 DBNDD1Q9H9R9 158 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PRMT7Q9NVM4 692 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 SCN7AQ01118 1682 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 TRIM64A6NGJ6 449 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 TRIM64BA6NI03 449 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 IFRD1O00458 451 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 F9P00740 461 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 RAG1P15918 1043 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 RCVRNP35243 200 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 RPL14P50914 215 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 NFYCQ13952 458 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 DDR2Q16832 855 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ATP13A4Q4VNC1 1196 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 STEAP4Q687X5 459 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 KDELC2Q7Z4H8 507 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PHC2Q8IXK0 858 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SFRP1Q8N474 314 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 UTP15Q8TED0 518 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 FAM193BQ96PV7 902 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 TCF12Q99081 682 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ADPGKQ9BRR6 497 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 THUMPD3Q9BV44 507 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 ACAD9Q9H845 621 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms