RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 M0QYT0 321 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 DDX3YO15523 660 aaKnown RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 NOS1APO75052 506 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 PDHA2P29803 388 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 GRIA3P42263 894 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 MSLNQ13421 630 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 STARD3Q14849 445 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 ARHGAP36Q6ZRI8 547 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CXXC5Q7LFL8 322 aaKnown RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 APTXQ7Z2E3 356 aaKnown RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 HTR3CQ8WXA8 447 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 IKZF3Q9UKT9 509 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 C15orf38-AP3S2A0A0A6YYH1 394 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 WTIPA6NIX2 430 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 AMHR2Q16671 573 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TDRD10Q5VZ19 366 aaKnown RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF470Q6ECI4 717 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ARPINQ7Z6K5 226 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 COG5Q9UP83 839 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ANKRD63C9JTQ0 380 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 MDM4O15151 490 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 CEBPGP53567 150 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 EVX2Q03828 476 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 HPS6Q86YV9 775 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 POMKQ9H5K3 350 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SNRNP200O75643 2136 aaKnown RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 KDELR1P24390 212 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 GPR15P49685 360 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 RIPK1Q13546 671 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 POU6F1Q14863 301 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 GRIK5Q16478 980 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF621Q6ZSS3 439 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SLC9A6Q92581 669 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 C18orf25Q96B23 403 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SLC38A2Q96QD8 506 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 APOL2Q9BQE5 337 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TMEM134Q9H6X4 195 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TSPAN16Q9UKR8 245 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 EFR3BQ9Y2G0 817 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 RBMX2Q9Y388 322 aaKnown RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 F5H5T6 163 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 UMPSP11172 480 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 PLCL1Q15111 1095 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ARCQ7LC44 396 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF224Q9NZL3 707 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 PLCL2Q9UPR0 1127 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 IRAK3Q9Y616 596 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 PSMD12O00232 456 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 FSCN2O14926 492 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ACADLP28330 430 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 LACTB2Q53H82 288 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 BICRALQ6AI39 1079 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 RPTNQ6XPR3 784 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 PIH1D2Q8WWB5 315 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 OSBPL11Q9BXB4 747 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 RACGAP1Q9H0H5 632 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 AP3M1Q9Y2T2 418 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 PLCH1Q4KWH8 1693 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ENO2P09104 434 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 UQCRBP14927 111 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 CPT1AP50416 773 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 FNBP1LQ5T0N5 605 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 ARMC8Q8IUR7 673 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 IQCF2Q8IXL9 164 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 FBXW8Q8N3Y1 598 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 STN1Q9H668 368 aaKnown RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 NFASCO94856 1347 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 A0A1B0GUL6 1792 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SSTR1P30872 391 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TGFB2P61812 414 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TMEM62Q0P6H9 643 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TMEM109Q9BVC6 243 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 CLK4Q9HAZ1 481 aaKnown RBP9.95□□□□□ -0.82
COL6A3-201ENST00000295550 GMPPBQ9Y5P6 360 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SCN8AQ9UQD0 1980 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TGFB1I1O43294 461 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 CLCN3P51790 818 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 EFR3AQ14156 821 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SLCO6A1Q86UG4 719 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 SFRP1Q8N474 314 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 KAT5Q92993 513 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 BBS4Q96RK4 519 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 TBCDQ9BTW9 1192 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 MED28Q9H204 178 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 NMRAL1Q9HBL8 299 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 C12orf4Q9NQ89 552 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 UBIAD1Q9Y5Z9 338 aa9.95□□□□□ -0.82
COL6A3-201ENST00000295550 CYP4B1P13584 511 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 MYL9P24844 172 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF143P52747 638 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 SQLEQ14534 574 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZIK1Q3SY52 487 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-201ENST00000295550 DAW1Q8N136 415 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ATP6V0D2Q8N8Y2 350 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 RHOBTB2Q9BYZ6 727 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF304Q9HCX3 659 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 INVSQ9Y283 1065 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 STX16-NPEPL1H3BU86 382 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 STX16O14662 325 aa9.94□□□□□ -0.82
COL6A3-201ENST00000295550 ATN1P54259 1190 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms