RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CDK7P50613 346 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 CRYBB1P53674 252 aaPredicted RBP21.54■■□□□ 1.04
TRIM28-201ENST00000253024 DDR2Q16832 855 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 PKN3Q6P5Z2 889 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 OR52K2Q8NGK3 314 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 SMARCD1Q96GM5 515 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 UBAP1Q9NZ09 502 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 ACTL7AQ9Y615 435 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 SBF1O95248 1867 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 PRSS56P0CW18 603 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 THRAP10827 490 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 RAB10P61026 200 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 BTBD8Q5XKL5 378 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 KBTBD6Q86V97 674 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 PQLC1Q8N2U9 271 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 RTKNQ9BST9 563 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 C15orf38-AP3S2A0A0A6YYH1 394 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 SCNN1AP37088 669 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 C1QTNF8P60827 252 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 CMPK2Q5EBM0 449 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 ARPINQ7Z6K5 226 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 AMIGO2Q86SJ2 522 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 ANKRD49Q8WVL7 239 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 ALG9Q9H6U8 611 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 NMUR1Q9HB89 426 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 ARHGEF38Q9NXL2 777 aa21.54■■□□□ 1.04
TRIM28-201ENST00000253024 TPST1O60507 370 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 PPARGP37231 505 aaPredicted RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 CD86P42081 329 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 NPY2RP49146 381 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 PDAP1Q13442 181 aaKnown RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 AGKQ53H12 422 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 ARHGAP12Q8IWW6 846 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 ST13P4Q8IZP2 240 aaPredicted RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 GRIP2Q9C0E4 1043 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 FBXO5Q9UKT4 447 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 DSEQ9UL01 958 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 A0A0U1RQS6 177 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 FESP07332 822 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 ALOX15P16050 662 aaPredicted RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 MAGEA12P43365 314 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 FSCN1Q16658 493 aaKnown RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 BNIPLQ7Z465 357 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 PPHLN1Q8NEY8 458 aaKnown RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 DIS3LQ8TF46 1054 aaKnown RBP21.53■■□□□ 1.04
TRIM28-201ENST00000253024 PHF12Q96QT6 1004 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 CYP2S1Q96SQ9 504 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 GLOD4Q9HC38 313 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 ADAM28Q9UKQ2 775 aa21.53■■□□□ 1.04
TRIM28-201ENST00000253024 CLGNO14967 610 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 DSC2Q02487 901 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 LIN52Q52LA3 116 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 DENND5AQ6IQ26 1287 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 SMIM14Q96QK8 99 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 PRPF18Q99633 342 aaKnown RBP21.52■■□□□ 1.04
TRIM28-201ENST00000253024 DNAI2Q9GZS0 605 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 M0QZ92 97 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 SCAMP3O14828 347 aaKnown RBP21.52■■□□□ 1.04
TRIM28-201ENST00000253024 MGEA5O60502 916 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 GRK4P32298 578 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 NAB1Q13506 487 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 PCID2Q5JVF3 399 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 SIKE1Q9BRV8 207 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 PDP2Q9P2J9 529 aa21.52■■□□□ 1.04
TRIM28-201ENST00000253024 MAFKO60675 156 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 CNTN5O94779 1100 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 SUPT7LO94864 414 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 FBXO21O94952 628 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 THPOP40225 353 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 KCNC1P48547 511 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 SLC5A3P53794 718 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 CDKL1Q00532 357 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 PRKAA1Q13131 559 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 PTK2BQ14289 1009 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 GPR158Q5T848 1215 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 IL23RQ5VWK5 629 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 NEPROQ6NW34 567 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 DCBLD1Q8N8Z6 715 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 NTAN1Q96AB6 310 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 STN1Q9H668 368 aaKnown RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 TRHDEQ9UKU6 1024 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 PRG3Q9Y2Y8 225 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 SIX3O95343 332 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 ZNF865P0CJ78 1059 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 LHX1P48742 406 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 ARSDP51689 593 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 WNT3AP56704 352 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 SLC10A7Q0GE19 358 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 GDF6Q6KF10 455 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 AAGABQ6PD74 315 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 STYXQ8WUJ0 223 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 A0A1W2PQH9 124 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 E7ENX8 843 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 AHCYL1O43865 530 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 TSPAN3O60637 253 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 HAPLN1P10915 354 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 CPB1P15086 417 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 ADAM17P78536 824 aa21.51■■□□□ 1.03
TRIM28-201ENST00000253024 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.51■■□□□ 1.03
TRIM28-201ENST00000253024 TTC9BQ8N6N2 239 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms