RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SLC2A6Q9UGQ3 507 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 RAB26Q9ULW5 256 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 PCNTO95613 3336 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 ARNTP27540 789 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 ATXN3P54252 364 aaPredicted RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 SEPT6Q14141 434 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 OLFML2BQ68BL8 750 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 DENND5AQ6IQ26 1287 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 ANKRD23Q86SG2 305 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 CCDC117Q8IWD4 279 aaPredicted RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 TXNDC5Q8NBS9 432 aaKnown RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 C3orf58Q8NDZ4 430 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 PPP1R2P1Q96PQ5 205 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 NPAS2Q99743 824 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 ENTPD7Q9NQZ7 604 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 RIMS3Q9UJD0 308 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 COMMD3-BMI1R4GMX3 469 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 SMIM31A0A1B0GVY4 71 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 STX16-NPEPL1H3BU86 382 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 MATN3O15232 486 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 PMPCBO75439 489 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 BCAS2O75934 225 aaPredicted RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 BDNFP23560 247 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 ATP5F1P24539 256 aaPredicted RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 DPP6P42658 865 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 CPT1AP50416 773 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 AFF1P51825 1210 aaKnown RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 TAS2R39P59534 338 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 TRIM67Q6ZTA4 783 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 ARHGAP12Q8IWW6 846 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 C2CD4AQ8NCU7 369 aaPredicted RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 ADCY4Q8NFM4 1077 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 HEXDCQ8WVB3 486 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 IL12RB2Q99665 862 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 TRIM62Q9BVG3 475 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 MRPL1Q9BYD6 325 aaKnown RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 MRM3Q9HC36 420 aaKnown RBP18.92■□□□□ 0.62
CPSF3-201ENST00000238112 CLIC5Q9NZA1 410 aa18.92■□□□□ 0.62
CPSF3-201ENST00000238112 CASTOR2A6NHX0 329 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 MAFKO60675 156 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 DNAJA2O60884 412 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 POU4F1Q01851 419 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 PTK2BQ14289 1009 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 SATL1Q86VE3 508 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 NAT14Q8WUY8 206 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 ZNF419Q96HQ0 510 aaPredicted RBP18.91■□□□□ 0.62
CPSF3-201ENST00000238112 MAELQ96JY0 434 aaKnown RBP18.91■□□□□ 0.62
CPSF3-201ENST00000238112 TRPV6Q9H1D0 765 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 CATSPERBQ9H7T0 1116 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 FAM105AQ9NUU6 356 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 NDUFA13Q9P0J0 144 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 EPS15L1Q9UBC2 864 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 NEU3Q9UQ49 428 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 FIS1Q9Y3D6 152 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 TCAF2A6NFQ2 919 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 SDHDO14521 159 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 DNAJB13P59910 316 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 BEX3Q00994 111 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 FAM110CQ1W6H9 321 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 KDELC2Q7Z4H8 507 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 SPATA24Q86W54 205 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 AFAP1L2Q8N4X5 818 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 LZTR1Q8N653 840 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 KATNAL1Q9BW62 490 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 SLC39A8Q9C0K1 460 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 CHST12Q9NRB3 414 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 ARHGEF38Q9NXL2 777 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 ADA2Q9NZK5 511 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 FBXO5Q9UKT4 447 aa18.91■□□□□ 0.62
CPSF3-201ENST00000238112 FGF10O15520 208 aaPredicted RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 CRTAMO95727 393 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 HNRNPLP14866 589 aaKnown RBP eCLIP18.9■□□□□ 0.622e-6■■■□□ 17.7
CPSF3-201ENST00000238112 CPB1P15086 417 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 TCN1P20061 433 aaPredicted RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 CSHL1Q14406 222 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 FAM83EQ2M2I3 478 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 KIAA0930Q6ICG6 404 aaPredicted RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 LPPQ93052 612 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 PARK7Q99497 189 aaKnown RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 SUDS3Q9H7L9 328 aaPredicted RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 RBM22Q9NW64 420 aaKnown RBP eCLIP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 AP4B1Q9Y6B7 739 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 M0QZ92 97 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 TRIM38O00635 465 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 PGM3O95394 542 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 HLA-DQB2P05538 268 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 ODC1P11926 461 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 ETS2P15036 469 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 ADRA1AP35348 466 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 SH3BGRP55822 239 aaPredicted RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 TIGD7Q6NT04 549 aaPredicted RBP18.9■□□□□ 0.62
CPSF3-201ENST00000238112 NEPROQ6NW34 567 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 GK5Q6ZS86 529 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 FAR2Q96K12 515 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 HAPLN3Q96S86 360 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 PKP2Q99959 881 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 PRKD2Q9BZL6 878 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 ATXN3LQ9H3M9 355 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 TREX1Q9NSU2 369 aa18.9■□□□□ 0.62
CPSF3-201ENST00000238112 MRGBPQ9NV56 204 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms