RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 POMKQ9H5K3 350 aa12.54□□□□□ -0.4
NUP88-201ENST00000225696 FAM124BQ9H5Z6 455 aaPredicted RBP12.54□□□□□ -0.4
NUP88-201ENST00000225696 FBRSL1Q9HCM7 1045 aaKnown RBP12.54□□□□□ -0.4
NUP88-201ENST00000225696 TMEM30AQ9NV96 361 aa12.54□□□□□ -0.4
NUP88-201ENST00000225696 EBF1Q9UH73 591 aa12.54□□□□□ -0.4
NUP88-201ENST00000225696 CNOT11Q9UKZ1 510 aaKnown RBP12.54□□□□□ -0.4
NUP88-201ENST00000225696 ACOT9Q9Y305 439 aa12.54□□□□□ -0.4
NUP88-201ENST00000225696 DNAJC25-GNG10A0A024R161 153 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ATP6AP2A0A1C7CYW4 349 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ZNF839A8K0R7 811 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 HTRA2O43464 458 aaPredicted RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 DAB1O75553 588 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ATP6AP2O75787 350 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 YWHAQP27348 245 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 TAS2R39P59534 338 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 PRAMEP78395 509 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 FRG1Q14331 258 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 LPIN1Q14693 890 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ZNF789Q5FWF6 425 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 KIAA0319Q5VV43 1072 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 POTEHQ6S545 545 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 CYHR1Q6ZMK1 362 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 CHSY3Q70JA7 882 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 GPRIN1Q7Z2K8 1008 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 TRIM74Q86UV6 250 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 TRIM73Q86UV7 250 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 RNF135Q8IUD6 432 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 FIBCD1Q8N539 461 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 FAM47BQ8NA70 645 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 DIS3LQ8TF46 1054 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 WNT8BQ93098 351 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 SGIP1Q9BQI5 828 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 CHCHD3Q9NX63 227 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 RBPJLQ9UBG7 517 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 SUCOQ9UBS9 1254 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 BCAP29Q9UHQ4 241 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 CNOT6Q9ULM6 557 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 PADI4Q9UM07 663 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 POLR2AP24928 1970 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 FAM95CA0A1B0GW59 222 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 FAM149AA5PLN7 773 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 PIRO00625 290 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 DLGAP1O14490 977 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ZSCAN9O15535 394 aaPredicted RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 RECQL4O94761 1208 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 APOA4P06727 396 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ADSLP30566 484 aaPredicted RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 ETFBP38117 255 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ACADSBP45954 432 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 CDK9P50750 372 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 TPI1P60174 286 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 RAB10P61026 200 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ANKDD1AQ495B1 522 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 DALRD3Q5D0E6 543 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 NHSL2Q5HYW2 709 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 NOL9Q5SY16 702 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 ITPRIPL1Q6GPH6 555 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ALKAL1Q6UXT8 129 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ERI1Q8IV48 349 aaKnown RBP12.53□□□□□ -0.4
NUP88-201ENST00000225696 LRRC52Q8N7C0 313 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 B3GALNT2Q8NCR0 500 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 DPF3Q92784 378 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 SLC45A3Q96JT2 553 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 KIFC1Q9BW19 673 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 UNC93B1Q9H1C4 597 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 SNX25Q9H3E2 840 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ATXN3LQ9H3M9 355 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 CD300AQ9UGN4 299 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 ANKRD6Q9Y2G4 727 aa12.53□□□□□ -0.4
NUP88-201ENST00000225696 TCRBV3S1A0A5B6 114 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 C9JVG2 144 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 CLIC3O95833 236 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 SLC1A2P43004 574 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 ARCN1P48444 511 aaKnown RBP12.52□□□□□ -0.4
NUP88-201ENST00000225696 NPY2RP49146 381 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 ENTPD1P49961 510 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 MAP3K7CLP57077 242 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 PRKCQQ04759 706 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 FASTKQ14296 549 aaKnown RBP12.52□□□□□ -0.4
NUP88-201ENST00000225696 KYAT1Q16773 422 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 RBM20Q5T481 1227 aaKnown RBP12.52□□□□□ -0.4
NUP88-201ENST00000225696 ELMSAN1Q6PJG2 1045 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 CLEC20AQ6ZU45 233 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 BEST2Q8NFU1 509 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 SH3RF2Q8TEC5 729 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 CANT1Q8WVQ1 401 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 IRGQQ8WZA9 623 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 RPL10LQ96L21 214 aaKnown RBP12.52□□□□□ -0.4
NUP88-201ENST00000225696 TEKT5Q96M29 485 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 C16orf70Q9BSU1 422 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 OSBPL11Q9BXB4 747 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 DUSP16Q9BY84 665 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 TRIM8Q9BZR9 551 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 FAM49AQ9H0Q0 323 aaPredicted RBP12.52□□□□□ -0.4
NUP88-201ENST00000225696 CHST12Q9NRB3 414 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 MYRFQ9Y2G1 1151 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 ZNF510Q9Y2H8 683 aa12.52□□□□□ -0.4
NUP88-201ENST00000225696 TSC2P49815 1807 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 ZSWIM8A7E2V4 1837 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 MAGEB16A2A368 324 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms