RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 INSIG1O15503 277 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 KDELR3O43731 214 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 TMCC1O94876 653 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 FTLP02792 175 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 CAPNS1P04632 268 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 CCDC172P0C7W6 258 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 HNRNPA2B1P22626 353 aaKnown RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 PSMA2P25787 234 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 ITGB7P26010 798 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 ETFBP38117 255 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 ABL2P42684 1182 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 ZNF165P49910 485 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 NEK3P51956 506 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 NRG1Q02297 640 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 CCDC15Q0P6D6 951 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 MAMLD1Q13495 774 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 CA9Q16790 459 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 PPP1R15BQ5SWA1 713 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 E4F1Q66K89 784 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 NEK5Q6P3R8 708 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 ZNF571Q7Z3V5 609 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 TMC6Q7Z403 805 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 PTAR1Q7Z6K3 402 aaPredicted RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 TTC7BQ86TV6 843 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 SLC25A45Q8N413 288 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 RTL3Q8N8U3 475 aaKnown RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 TMEM145Q8NBT3 493 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 NTAN1Q96AB6 310 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 CELF6Q96J87 481 aaKnown RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 FEM1CQ96JP0 617 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 EXOC2Q96KP1 924 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 KLHL32Q96NJ5 620 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 SLC17A9Q9BYT1 436 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 HAUS4Q9H6D7 363 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 CCDC86Q9H6F5 360 aaKnown RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 ERVMER34-1Q9H9K5 563 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 MYO1AQ9UBC5 1043 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 TPX2Q9ULW0 747 aaKnown RBP10.46□□□□□ -0.73
SCN1A-222ENST00000642141 FADS3Q9Y5Q0 445 aa10.46□□□□□ -0.73
SCN1A-222ENST00000642141 RASA4BC9J798 803 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 RASA4O43374 803 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SIGLEC6O43699 453 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 MAGEC1O60732 1142 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 DKK1O94907 266 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 POP4O95707 220 aaKnown RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SERPINC1P01008 464 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 JUPP14923 745 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 DGKAP23743 735 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 NUDT1P36639 197 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 RXRGP48443 463 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 GSCP56915 257 aaPredicted RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SNRPD1P62314 119 aaKnown RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 RPS21P63220 83 aaKnown RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SEMG2Q02383 582 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 CYP4F3Q08477 520 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SGCGQ13326 291 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 FILIP1LQ4L180 1135 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 TMEM259Q4ZIN3 620 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 ZNF805Q5CZA5 627 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SFMBT2Q5VUG0 894 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 GCNT7Q6ZNI0 430 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 KANSL1Q7Z3B3 1105 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 IQCHQ86VS3 1027 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SLC22A18ASQ8N1D0 253 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 OR2AP1Q8NGE2 309 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 ISG20Q96AZ6 181 aaKnown RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 BMFQ96LC9 184 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 EPAS1Q99814 870 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 BPIFA3Q9BQP9 254 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SYT11Q9BT88 431 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 WRAP53Q9BUR4 548 aaKnown RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 DHX35Q9H5Z1 703 aaKnown RBP10.45□□□□□ -0.74
SCN1A-222ENST00000642141 PARVAQ9NVD7 372 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 DNAJC28Q9NX36 388 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 RAXQ9Y2V3 346 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 DOCK4Q8N1I0 1966 aa10.45□□□□□ -0.74
SCN1A-222ENST00000642141 SYCE3A1L190 88 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 J3KR12 359 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 DDX3XO00571 662 aaKnown RBP eCLIP10.44□□□□□ -0.74
SCN1A-222ENST00000642141 YKT6O15498 198 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 DAPK3O43293 454 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 MMP20O60882 483 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 NEBLO76041 1014 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 PIGNO95427 931 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 ACADVLP49748 655 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 GEMIN4P57678 1058 aaKnown RBP10.44□□□□□ -0.74
SCN1A-222ENST00000642141 TPI1P60174 286 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 RHOAP61586 193 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 KLHL30Q0D2K2 578 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 OVGP1Q12889 678 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 SERINC3Q13530 473 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 CYTH1Q15438 398 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 TCEA2Q15560 299 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 PPP6R3Q5H9R7 873 aaPredicted RBP10.44□□□□□ -0.74
SCN1A-222ENST00000642141 TPRG1LQ5T0D9 272 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 GDPD4Q6W3E5 623 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 LUZP1Q86V48 1076 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 VPS36Q86VN1 386 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 GALNT15Q8N3T1 639 aa10.44□□□□□ -0.74
SCN1A-222ENST00000642141 OXR1Q8N573 874 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms