RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FGGP02679 453 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PROS1P07225 676 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 IRS1P35568 1242 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RGS2P41220 211 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EIF3EP60228 445 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RPS6KA2Q15349 733 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KIZQ2M2Z5 673 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KRBOX4Q5JUW0 171 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLFN13Q68D06 897 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MOXD1Q6UVY6 613 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SPRED1Q7Z699 444 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RALGPS2Q86X27 583 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZCCHC14Q8WYQ9 949 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 WNT5BQ9H1J7 359 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TBC1D24Q9ULP9 559 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC182A6NF36 153 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CAPN8A6NHC0 703 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PSMD12O00232 456 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PRRG1O14668 218 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KIAA0391O15091 583 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TNFRSF6BO95407 300 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RARBP10826 455 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KCNJ1P48048 391 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ALDH7A1P49419 539 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LRRC63Q05C16 580 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GPS1Q13098 491 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LACTB2Q53H82 288 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TRMT11Q7Z4G4 463 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CYP4Z2PQ8N1L4 340 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NCOA7Q8NI08 942 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MBOAT7Q96N66 472 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LRFN5Q96NI6 719 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 BHLHE41Q9C0J9 482 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EBF3Q9H4W6 596 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MROH8Q9H579 483 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PLGRKTQ9HBL7 147 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CENPMQ9NSP4 180 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GNG8Q9UK08 70 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLC27A5Q9Y2P5 690 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CAMTA2O94983 1202 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CNIH1O95406 144 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GJB6O95452 261 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A6P19224 532 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLC7A1P30825 629 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SMSP52788 366 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 INHBCP55103 352 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ARL4CP56559 192 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NOMO1Q15155 1222 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RASSF6Q6ZTQ3 369 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PTCHD4Q6ZW05 846 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MAMDC2Q7Z304 686 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 VIPAS39Q9H9C1 493 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LATS2Q9NRM7 1088 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CLEC5AQ9NY25 188 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MRPL15Q9P015 296 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 IL20RAQ9UHF4 553 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SORCS3Q9UPU3 1222 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NEDD4P46934 1319 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF644Q9H582 1327 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NCOR1O75376 2440 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GRID2IPA4D2P6 1211 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 OPLAHO14841 1288 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 HOXC11O43248 304 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RBMXL2O75526 392 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ITGA2BP08514 1039 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PSMC6P62333 389 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CLDN10P78369 228 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GAS6Q14393 721 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FSCN1Q16658 493 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 C2CD6Q53TS8 623 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF311Q5JNZ3 666 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SPESP1Q6UW49 350 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CATSPERDQ86XM0 798 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DNAAF5Q86Y56 855 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ECHDC3Q96DC8 303 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DSCC1Q9BVC3 393 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 OR51V1Q9H2C8 321 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NDST4Q9H3R1 872 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RAB20Q9NX57 234 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLC9A8Q9Y2E8 581 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NPIPA2E9PIF3 369 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 HMGCRP04035 888 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 HMGN1P05114 100 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CCND2P30279 289 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GGCXP38435 758 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 HIC1Q14526 733 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TNFAIP8L3Q5GJ75 292 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CREB3L2Q70SY1 520 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KCTD20Q7Z5Y7 419 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 C12orf56Q8IXR9 622 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TSEN2Q8NCE0 465 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FBXO27Q8NI29 283 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MAGEB10Q96LZ2 347 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ELP3Q9H9T3 547 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ACTR10Q9NZ32 417 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MAT2BQ9NZL9 334 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLAIN2Q9P270 581 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EIF3KQ9UBQ5 218 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RAD54BQ9Y620 910 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LRRC53A6NM62 1247 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms