RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 KLF6Q99612 283 aaPredicted RBP19.76■□□□□ 0.75
CLN3-262ENST00000637699 IL12RB2Q99665 862 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 CEP44Q9C0F1 390 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 ZDHHC6Q9H6R6 413 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 SALL4Q9UJQ4 1053 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 FCF1Q9Y324 198 aaKnown RBP19.76■□□□□ 0.75
CLN3-262ENST00000637699 ACTL7AQ9Y615 435 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 PMS2P1A4D2B8 440 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 EME2A4GXA9 379 aaPredicted RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 PYCARD-AS1I3L0S3 204 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 NEMP1O14524 444 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 MUSKO15146 869 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 AP1G1O43747 822 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 LZTS3O60299 673 aaPredicted RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 PON1P27169 355 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 GKP32189 559 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 CLCN1P35523 988 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 ARF5P84085 180 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 EIF2B5Q13144 721 aaKnown RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 NR0B2Q15466 257 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 PERM1Q5SV97 790 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 ARTNQ5T4W7 220 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 IGF2-ASQ6U949 168 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 RBM44Q6ZP01 1051 aaKnown RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 RYBPQ8N488 228 aaPredicted RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 PGAP3Q96FM1 320 aaPredicted RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 LENG8Q96PV6 779 aaPredicted RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 C1QTNF2Q9BXJ5 285 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 TM6SF2Q9BZW4 377 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 PDCL3Q9H2J4 239 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 HECAQ9UBI9 543 aaPredicted RBP19.75■□□□□ 0.75
CLN3-262ENST00000637699 DNAJC12Q9UKB3 198 aa19.75■□□□□ 0.75
CLN3-262ENST00000637699 RP1P56715 2156 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 B8ZZF3 427 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 FOXN3O00409 490 aaPredicted RBP19.74■□□□□ 0.75
CLN3-262ENST00000637699 CASC3O15234 703 aaKnown RBP19.74■□□□□ 0.75
CLN3-262ENST00000637699 C6P13671 934 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 ABL2P42684 1182 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 C1orf61Q13536 156 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 SLC25A52Q3SY17 297 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 FAM102AQ5T9C2 384 aaPredicted RBP19.74■□□□□ 0.75
CLN3-262ENST00000637699 KIAA1614Q5VZ46 1190 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 ZNF783Q6ZMS7 281 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 DRC7Q8IY82 874 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 RBFAQ8N0V3 343 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 OR6K2Q8NGY2 324 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 TPCN2Q8NHX9 752 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 SNRNP27Q8WVK2 155 aaKnown RBP19.74■□□□□ 0.75
CLN3-262ENST00000637699 GRAMD1AQ96CP6 724 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 PRR11Q96HE9 360 aaPredicted RBP19.74■□□□□ 0.75
CLN3-262ENST00000637699 TCEAL2Q9H3H9 227 aaPredicted RBP19.74■□□□□ 0.75
CLN3-262ENST00000637699 ZNF212Q9UDV6 495 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 GGT7Q9UJ14 662 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 ITM2BQ9Y287 266 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 SSUH2Q9Y2M2 353 aa19.74■□□□□ 0.75
CLN3-262ENST00000637699 KIF26BQ2KJY2 2108 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 C16orf96A6NNT2 1141 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 TPP1O14773 563 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 TSPAN6O43657 245 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 GCATO75600 419 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 KRT10P13645 584 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 ADKP55263 362 aaKnown RBP19.73■□□□□ 0.75
CLN3-262ENST00000637699 PFN3P60673 137 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 GNA12Q03113 381 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 PRRT3Q5FWE3 981 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 ACBD5Q5T8D3 534 aaPredicted RBP19.73■□□□□ 0.75
CLN3-262ENST00000637699 TMEM35BQ8NCS4 154 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 BTN2A2Q8WVV5 523 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 CCDC97Q96F63 343 aaPredicted RBP19.73■□□□□ 0.75
CLN3-262ENST00000637699 ZYG11BQ9C0D3 744 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 SYNDIG1Q9H7V2 258 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 SIX2Q9NPC8 291 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 WDR70Q9NW82 654 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 SPASTQ9UBP0 616 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 PCDHGA8Q9Y5G5 932 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 COL27A1Q8IZC6 1860 aaPredicted RBP19.73■□□□□ 0.75
CLN3-262ENST00000637699 MYO18BQ8IUG5 2567 aa19.73■□□□□ 0.75
CLN3-262ENST00000637699 DOCK4Q8N1I0 1966 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 K7ENP7 123 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 TNFSF15O95150 251 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 CD160O95971 181 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 FLT3P36888 993 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 ACVRL1P37023 503 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 RPIAP49247 311 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 THOP1P52888 689 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 SKOR1P84550 965 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 C2CD6Q53TS8 623 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 INO80CQ6PI98 192 aaPredicted RBP19.72■□□□□ 0.75
CLN3-262ENST00000637699 ZSCAN30Q86W11 494 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 FAM131BQ86XD5 332 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 SLC35F3Q8IY50 421 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 ARL14Q8N4G2 192 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 GLMNQ92990 594 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 C18orf8Q96DM3 657 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 HAPLN3Q96S86 360 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 BOCQ9BWV1 1114 aa19.72■□□□□ 0.75
CLN3-262ENST00000637699 APOBEC3BQ9UH17 382 aaKnown RBP19.72■□□□□ 0.75
CLN3-262ENST00000637699 GTPBP10A4D1E9 387 aaKnown RBP19.71■□□□□ 0.75
CLN3-262ENST00000637699 CDRT15L2A8MXV6 281 aa19.71■□□□□ 0.75
CLN3-262ENST00000637699 GOLGA8SH3BPF8 625 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms