RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CHD5Q8TDI0 1954 aa14.82□□□□□ -0.04
CLN3-249ENST00000636685 ZNF891A8MT65 544 aaPredicted RBP14.81□□□□□ -0.04
CLN3-249ENST00000636685 KCNU1A8MYU2 1149 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 POLR2DO15514 142 aaKnown RBP14.81□□□□□ -0.04
CLN3-249ENST00000636685 NKX2-8O15522 239 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 DUX1O43812 170 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 ENDOD1O94919 500 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 FBXO21O94952 628 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 PITX1P78337 314 aaPredicted RBP14.81□□□□□ -0.04
CLN3-249ENST00000636685 PPARDQ03181 441 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 STK38Q15208 465 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 TMEM164Q5U3C3 297 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 CAPRIN2Q6IMN6 1127 aaKnown RBP14.81□□□□□ -0.04
CLN3-249ENST00000636685 FBXL22Q6P050 247 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 SHC4Q6S5L8 630 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 SLITRK4Q8IW52 837 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 ATP6V0D2Q8N8Y2 350 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 FBXL13Q8NEE6 735 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 SCG3Q8WXD2 468 aaKnown RBP14.81□□□□□ -0.04
CLN3-249ENST00000636685 RPRD1AQ96P16 312 aaPredicted RBP14.81□□□□□ -0.04
CLN3-249ENST00000636685 PSMB7Q99436 277 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 SEMA6CQ9H3T2 930 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 MAGEF1Q9HAY2 307 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 GGT7Q9UJ14 662 aa14.81□□□□□ -0.04
CLN3-249ENST00000636685 ARHGEF17Q96PE2 2063 aaPredicted RBP14.8□□□□□ -0.04
CLN3-249ENST00000636685 M0QYT0 321 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 M0QYV0 167 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 AP1G1O43747 822 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 CALUO43852 315 aaPredicted RBP14.8□□□□□ -0.04
CLN3-249ENST00000636685 SEMA7AO75326 666 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 CALCAP01258 141 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 PRKAR1AP10644 381 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 NR1D1P20393 614 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 NR2F2P24468 414 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 ITGB7P26010 798 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 TNFRSF8P28908 595 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 L1CAMP32004 1257 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 GTF2H1P32780 548 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 IGFALSP35858 605 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 DCTP40126 519 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 NASPP49321 788 aaPredicted RBP14.8□□□□□ -0.04
CLN3-249ENST00000636685 MXI1P50539 228 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 CUL2Q13617 745 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 ELOCQ15369 112 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 LVRNQ6Q4G3 990 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 LINGO4Q6UY18 593 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 DPY19L3Q6ZPD9 716 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 PARS2Q7L3T8 475 aaKnown RBP14.8□□□□□ -0.04
CLN3-249ENST00000636685 FSTL5Q8N475 847 aaPredicted RBP14.8□□□□□ -0.04
CLN3-249ENST00000636685 DENND6BQ8NEG7 585 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 EPAS1Q99814 870 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 ZSWIM1Q9BR11 485 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 B3GNT4Q9C0J1 378 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 MUC3BQ9H195 1237 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 EXOC1Q9NV70 894 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 VPS51Q9UID3 782 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 ITM2BQ9Y287 266 aa14.8□□□□□ -0.04
CLN3-249ENST00000636685 TRUB2O95900 331 aaKnown RBP14.79□□□□□ -0.04
CLN3-249ENST00000636685 PRR29P0C7W0 189 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 UGT1A3P35503 534 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 GGCXP38435 758 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 EIF4A3P38919 411 aaKnown RBP14.79□□□□□ -0.04
CLN3-249ENST00000636685 C22orf39Q6P5X5 142 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 MACC1Q6ZN28 852 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 NYAP1Q6ZVC0 841 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 SPRED1Q7Z699 444 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 VPS36Q86VN1 386 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 HID1Q8IV36 788 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 LINC00301Q8NCQ3 95 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 OR6C4Q8NGE1 309 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 GPBAR1Q8TDU6 330 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 TSACCQ96A04 125 aaPredicted RBP14.79□□□□□ -0.04
CLN3-249ENST00000636685 CENPTQ96BT3 561 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 HSFY1Q96LI6 401 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 EDEM3Q9BZQ6 932 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 CDH19Q9H159 772 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 SLC12A6Q9UHW9 1150 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 VANGL2Q9ULK5 521 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 TRAF3IP3Q9Y228 551 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 TP53TG5Q9Y2B4 290 aa14.79□□□□□ -0.04
CLN3-249ENST00000636685 SHANK1Q9Y566 2161 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 K7EM74 188 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 VPS4BO75351 444 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 ZNF821O75541 412 aaPredicted RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 CNTN5O94779 1100 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 IGLV3-25P01717 112 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 PRKCGP05129 697 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 ALPIP09923 528 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 CTSEP14091 401 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 ELAVL4P26378 380 aaKnown RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 PSMC2P35998 433 aaKnown RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 ABL2P42684 1182 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 RECQLP46063 649 aaPredicted RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 HK3P52790 923 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 YPEL5P62699 121 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 KRT83P78385 493 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 ENPEPQ07075 957 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 AUHQ13825 339 aaKnown RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 DEFB109BQ30KR1 87 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 EFHC2Q5JST6 749 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms