RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SLC20A1Q8WUM9 679 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 CASKIN2Q8WXE0 1202 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 BAP1Q92560 729 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 TBC1D31Q96DN5 1066 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 VPS16Q9H269 839 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 FZD3Q9NPG1 666 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 HECAQ9UBI9 543 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 FCF1Q9Y324 198 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 AK5Q9Y6K8 562 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 ANKRD36A6QL64 1941 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 H3BM21 787 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 SCAMP1O15126 338 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 KRT3P12035 628 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 CHRNB2P17787 502 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 EIF2S3P41091 472 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 NSFP46459 744 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 KRT31Q15323 416 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 C15orf59Q2T9L4 293 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 ZNF805Q5CZA5 627 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 RWDD4Q6NW29 188 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 LRRC69Q6ZNQ3 347 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 PTAR1Q7Z6K3 402 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 ANKRD20A12PQ8NF67 263 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 OR2AP1Q8NGE2 309 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 SNIP1Q8TAD8 396 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 BMFQ96LC9 184 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 C11orf70Q9BRQ4 267 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 ZDHHC6Q9H6R6 413 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 FAM207AQ9NSI2 230 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 NCKIPSDQ9NZQ3 722 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 CSNK1G3Q9Y6M4 447 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 SPTY2D1-AS1A0A0U1RR47 76 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 FPGTO14772 594 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 RRP8O43159 456 aaKnown RBP18.73■□□□□ 0.59
CLN3-241ENST00000635861 RAMP2O60895 175 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 LRIG2O94898 1065 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 POP4O95707 220 aaKnown RBP18.73■□□□□ 0.59
CLN3-241ENST00000635861 PAK4O96013 591 aaPredicted RBP18.73■□□□□ 0.59
CLN3-241ENST00000635861 CALB1P05937 261 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 GIMD1P0DJR0 217 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 ACVRL1P37023 503 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 AIF1P55008 147 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 CLDN2P57739 230 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 SGCGQ13326 291 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 MAPK8IP2Q13387 824 aaPredicted RBP18.73■□□□□ 0.59
CLN3-241ENST00000635861 SOWAHCQ53LP3 525 aaPredicted RBP18.73■□□□□ 0.59
CLN3-241ENST00000635861 PARGQ86W56 976 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 PHF13Q86YI8 300 aaPredicted RBP18.73■□□□□ 0.59
CLN3-241ENST00000635861 C3orf20Q8ND61 904 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 FAM172AQ8WUF8 416 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 SELENOOQ9BVL4 669 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 C1QTNF2Q9BXJ5 285 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 UCKL1Q9NWZ5 548 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 NEU3Q9UQ49 428 aa18.73■□□□□ 0.59
CLN3-241ENST00000635861 C16orf96A6NNT2 1141 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 TOR1BO14657 336 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 CSF2P04141 144 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 PLEKP08567 350 aaPredicted RBP18.72■□□□□ 0.59
CLN3-241ENST00000635861 NME1P15531 152 aaKnown RBP18.72■□□□□ 0.59
CLN3-241ENST00000635861 ACTN2P35609 894 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 HDAC4P56524 1084 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 CLDN6P56747 220 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 PTP4A2Q12974 167 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 RBM43Q6ZSC3 357 aaKnown RBP18.72■□□□□ 0.59
CLN3-241ENST00000635861 JOSD2Q8TAC2 188 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 TM6SF2Q9BZW4 377 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 NLRC4Q9NPP4 1024 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 LMBRD1Q9NUN5 540 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 NDFIP2Q9NV92 336 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 DNAJC28Q9NX36 388 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 ADAM22Q9P0K1 906 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 DNAI1Q9UI46 699 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 SIK3Q9Y2K2 1263 aa18.72■□□□□ 0.59
CLN3-241ENST00000635861 RP1P56715 2156 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 POM121BA6NF01 834 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 GOLGA6L22H0YM25 854 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 FFAR2O15552 330 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 KDELR3O43731 214 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 MT-CO3P00414 261 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 GPD1P21695 349 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 SEMG2Q02383 582 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 RAD51Q06609 339 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 FGL2Q14314 439 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 FZD2Q14332 565 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 SYCP1Q15431 976 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 INO80DQ53TQ3 878 aaPredicted RBP18.71■□□□□ 0.59
CLN3-241ENST00000635861 CDCP2Q5VXM1 449 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 SLFN11Q7Z7L1 901 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 RYBPQ8N488 228 aaPredicted RBP18.71■□□□□ 0.59
CLN3-241ENST00000635861 SLC30A5Q8TAD4 765 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 GPT2Q8TD30 523 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 BTN2A2Q8WVV5 523 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 FGF11Q92914 225 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 APOLD1Q96LR9 279 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 DCBLD2Q96PD2 775 aa18.71■□□□□ 0.59
CLN3-241ENST00000635861 KLF6Q99612 283 aaPredicted RBP18.71■□□□□ 0.59
CLN3-241ENST00000635861 KALRNO60229 2985 aa18.71■□□□□ 0.58
CLN3-241ENST00000635861 COL27A1Q8IZC6 1860 aaPredicted RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 GCN1Q92616 2671 aaKnown RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 SIGLEC16A6NMB1 481 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms