RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FAM95CA0A1B0GW59 222 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 NEMP1O14524 444 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 AIM2O14862 343 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 FGF10O15520 208 aaPredicted RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 IRAK2O43187 625 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 TADA2AO75478 443 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 DNAJB13P59910 316 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MPP1Q00013 466 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 BEX3Q00994 111 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 DLG1Q12959 904 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 UPP1Q16831 310 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 TIGD5Q53EQ6 642 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ESRP1Q6NXG1 681 aaKnown RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 BNC2Q6ZN30 1099 aaPredicted RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 CEP97Q8IW35 865 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 DENND6AQ8IWF6 608 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PGAM4Q8N0Y7 254 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PQLC1Q8N2U9 271 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ARHGAP18Q8N392 663 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 C2CD4AQ8NCU7 369 aaPredicted RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 RNF34Q969K3 372 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 AP5M1Q9H0R1 490 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ZBTB26Q9HCK0 441 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 DMAP1Q9NPF5 467 aaPredicted RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ENTPD7Q9NQZ7 604 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ST3GAL5Q9UNP4 418 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 A0A087X1B8 175 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 ARL5CA6NH57 179 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 DFFAO00273 331 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 AP1G1O43747 822 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 VAPBO95292 243 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 MT-CYBP00156 380 aaPredicted RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 CYP11A1P05108 521 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 STMN1P16949 149 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 AVPR1AP37288 418 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 GLRBP48167 497 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 PURAQ00577 322 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 ROR2Q01974 943 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 AFMIDQ63HM1 303 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 KIAA0930Q6ICG6 404 aaPredicted RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 RWDD4Q6NW29 188 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 ZFP1Q6P2D0 407 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 HIPK4Q8NE63 616 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 NXNL1Q96CM4 212 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 MRPL57Q9BQC6 102 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 FICDQ9BVA6 458 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 MRPL46Q9H2W6 279 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 TRPV2Q9Y5S1 764 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 CCDC78A2IDD5 438 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 ODC1P11926 461 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 SAT1P21673 171 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 THOP1P52888 689 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 PGGT1BP53609 377 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 CTBP1Q13363 440 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 POU6F1Q14863 301 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 LRRC36Q1X8D7 754 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 SH2D4BQ5SQS7 431 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 THEMIS2Q5TEJ8 643 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 CWF19L1Q69YN2 538 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 AGMOQ6ZNB7 445 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 PIWIL4Q7Z3Z4 852 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 MRPL10Q7Z7H8 261 aaKnown RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 MFN1Q8IWA4 741 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 ST13P4Q8IZP2 240 aaPredicted RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 IPMKQ8NFU5 416 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 RCN3Q96D15 328 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 FTHL17Q9BXU8 183 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 ACSS2Q9NR19 701 aa12.92□□□□□ -0.34
LINC00540-203ENST00000631321 TRIP12Q14669 1992 aaPredicted RBP12.92□□□□□ -0.34
LINC00540-203ENST00000631321 EME2A4GXA9 379 aaPredicted RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 JUNP05412 331 aaKnown RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 HSPA1AP0DMV8 641 aaKnown RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 HSPA1BP0DMV9 641 aaKnown RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 BDNFP23560 247 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SLC1A2P43004 574 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 ALDH1A3P47895 512 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CD151P48509 253 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SCNN1GP51170 649 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SATB1Q01826 763 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 POU4F1Q01851 419 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SPRYD7Q5W111 196 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 RANBP10Q6VN20 620 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 KIAA0408Q6ZU52 694 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 LRRC49Q8IUZ0 686 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 PIP4K2CQ8TBX8 421 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 LPPQ93052 612 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CATSPER2Q96P56 530 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CDRT15Q96T59 188 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SLC39A8Q9C0K1 460 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CATSPERBQ9H7T0 1116 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 ZNF408Q9H9D4 720 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CLIC5Q9NZA1 410 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 SLC2A6Q9UGQ3 507 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 BCAP29Q9UHQ4 241 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CASTOR2A6NHX0 329 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 M0QZ92 97 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 CAPNS1P04632 268 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 PAMP19021 973 aa12.91□□□□□ -0.34
LINC00540-203ENST00000631321 ATP5F1P24539 256 aaPredicted RBP12.91□□□□□ -0.34
LINC00540-203ENST00000631321 KPNA2P52292 529 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms