RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OR1E1P30953 314 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 SLC8A1P32418 973 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 ADRA1AP35348 466 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 ARCN1P48444 511 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 SESN3P58005 492 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 ABCE1P61221 599 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 KHDC1Q4VXA5 237 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 MARC1Q5VT66 337 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 RANBP10Q6VN20 620 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 PTAR1Q7Z6K3 402 aaPredicted RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 ZNF683Q8IZ20 524 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 PPHLN1Q8NEY8 458 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 PPP4R1Q8TF05 950 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 WDR60Q8WVS4 1066 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 FAM136AQ96C01 138 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 FUBP3Q96I24 572 aaKnown RBP eCLIP10.76□□□□□ -0.69
CUX1-221ENST00000622516 NUDCD1Q96RS6 583 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.76□□□□□ -0.695e-24■■■■■ 156.6
CUX1-221ENST00000622516 LNPEPQ9UIQ6 1025 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 DOCK4Q8N1I0 1966 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 CASP8AP2Q9UKL3 1982 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 SCN5AQ14524 2016 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 LOC100653049A0A140TA62 436 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 CAPN14A8MX76 684 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 TRAFD1O14545 582 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 TIMM44O43615 452 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 TLR5O60602 858 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 KRT34O76011 436 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 SLC35E2BP0CK96 405 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 NCF2P19878 526 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 PDPK2PQ6A1A2 396 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 CNSTQ6PJW8 725 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 PGBD5Q8N414 524 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 RBM15BQ8NDT2 890 aaKnown RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 NXNL1Q96CM4 212 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 SUDS3Q9H7L9 328 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 PRDM5Q9NQX1 630 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 TCAF1Q9Y4C2 921 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 FRMPD3Q5JV73 1810 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 TMEM189-UBE2V1I3L0A0 370 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 NEMP1O14524 444 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 SYN3O14994 580 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 PEX11AO75192 247 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 ZMPSTE24O75844 475 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 HSPA4LO95757 839 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 GALTP07902 379 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 SBK3P0C264 359 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 EZRP15311 586 aaKnown RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 ATF6P18850 670 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 MAGEA12P43365 314 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 GEMP55040 296 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 MXRA7P84157 204 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 THOC5Q13769 683 aaKnown RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 KPNB1Q14974 876 aaKnown RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 POLD3Q15054 466 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 ANO4Q32M45 955 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 RBM20Q5T481 1227 aaKnown RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 AFMIDQ63HM1 303 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 TIGD7Q6NT04 549 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 FAM117BQ6P1L5 589 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 KIRREL3Q8IZU9 778 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 TEX9Q8N6V9 391 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 MAPK15Q8TD08 544 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 C1orf74Q96LT6 269 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 MCMBPQ9BTE3 642 aa10.75□□□□□ -0.69
CUX1-221ENST00000622516 ACE2Q9BYF1 805 aaPredicted RBP10.75□□□□□ -0.69
CUX1-221ENST00000622516 FAM95CA0A1B0GW59 222 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 KLHL33A6NCF5 533 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 NEMP2A6NFY4 417 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 EIF4E1BA6NMX2 242 aaKnown RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 E9PBE3 544 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MUSKO15146 869 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 KLHL41O60662 606 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GJB5O95377 273 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 CCND1P24385 295 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 CDC25CP30307 473 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 IDH3AP50213 366 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 NAGLUP54802 743 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 TAS2R39P59534 338 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 DLG1Q12959 904 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 TUBB3Q13509 450 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MRPL58Q14197 206 aaKnown RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 INSCQ1MX18 579 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 STXBP5Q5T5C0 1151 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 NADSYN1Q6IA69 706 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 RPS27LQ71UM5 84 aaKnown RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 CLEC14AQ86T13 490 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 CENPLQ8N0S6 344 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 FSTL5Q8N475 847 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 OR52K2Q8NGK3 314 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 OR6P1Q8NGX9 317 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 DTX3LQ8TDB6 740 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 SH3RF2Q8TEC5 729 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 NSMCE1Q8WV22 266 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ELMO2Q96JJ3 720 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 EXOC2Q96KP1 924 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GPR22Q99680 433 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GATA5Q9BWX5 397 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 OSBPL1AQ9BXW6 950 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms