RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PDZD4Q76G19 769 aaPredicted RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 HPS6Q86YV9 775 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 FICDQ9BVA6 458 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 FTHL17Q9BXU8 183 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 XAB2Q9HCS7 855 aaKnown RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 TMEM216Q9P0N5 145 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 LZTS1Q9Y250 596 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 ACTL7AQ9Y615 435 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 PLXNB2O15031 1838 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 GABRDO14764 452 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 TSPAN3O60637 253 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PRKCGP05129 697 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 ALDH7A1P49419 539 aaKnown RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 STX3Q13277 289 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 LRRC8BQ6P9F7 803 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 DENND6AQ8IWF6 608 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PLD6Q8N2A8 252 aaKnown RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 ATPAF2Q8N5M1 289 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 EXOC2Q96KP1 924 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 FSD1LQ9BXM9 530 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 OXCT2Q9BYC2 517 aaPredicted RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 WWP1Q9H0M0 922 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 ZNF510Q9Y2H8 683 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 A0A088AWK7 358 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 VILLO15195 856 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PCSK6P29122 969 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 MAGEA8P43361 318 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 CYTH1Q15438 398 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 CES4AQ5XG92 561 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PACS1Q6VY07 963 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 CRLF3Q8IUI8 442 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 CCNYL1Q8N7R7 359 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 MRPL1Q9BYD6 325 aaKnown RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 NT5MQ9NPB1 228 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PNPOQ9NVS9 261 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 CDH9Q9ULB4 789 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 DNAJC16Q9Y2G8 782 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 DTNAQ9Y4J8 743 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PCDHA11Q9Y5I1 949 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PDLIM1O00151 329 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PTPRCAPQ14761 206 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 INTS6LQ5JSJ4 861 aaKnown RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 RPS27LQ71UM5 84 aaKnown RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 RTN4RL1Q86UN2 441 aaPredicted RBP14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 C10orf107Q8IVU9 208 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 OR6P1Q8NGX9 317 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 MZB1Q8WU39 189 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 SIKE1Q9BRV8 207 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 BRD8Q9H0E9 1235 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 CNGB3Q9NQW8 809 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 SLC2A6Q9UGQ3 507 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 SRRDQ9UH36 339 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 PCDHGA4Q9Y5G9 962 aa14.67□□□□□ -0.06
SHROOM1-208ENST00000617339 A0A0U1RQF3 1178 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 A0A0U1RQS6 177 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 FKBP6O75344 327 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 LRPAP1P30533 357 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 PLK1P53350 603 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CBX3Q13185 183 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 TUSC3Q13454 348 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CYLC2Q14093 348 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 ANKRD20A4Q4UJ75 823 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 PPP4R1Q8TF05 950 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CATSPER2Q96P56 530 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 SOX13Q9UN79 622 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 FAF1Q9UNN5 650 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 PLLPQ9Y342 182 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CAPN14A8MX76 684 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 KPNA6O60684 536 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 DGKIO75912 1065 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 TOMM70O94826 608 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 PDE1CQ14123 709 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 TLR1Q15399 786 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CNGA3Q16281 694 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 RAP1GAP2Q684P5 730 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 NXNQ6DKJ4 435 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 RNF168Q8IYW5 571 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 DEFB107AQ8IZN7 70 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 RAB3IL1Q8TBN0 382 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 SMIM31A0A1B0GVY4 71 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 NDC80O14777 642 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CNTN5O94779 1100 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 ALDOAP04075 364 aaKnown RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 ALDH2P05091 517 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 TSPAN8P19075 237 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CD68P34810 354 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 DUSP4Q13115 394 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CCNIQ14094 377 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 KCTD21Q4G0X4 260 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 FBXO48Q5FWF7 155 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 PRSS55Q6UWB4 352 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 METTL25Q8N6Q8 603 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 ZFP28Q8NHY6 868 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 ARNTL2Q8WYA1 636 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 C11orf84Q9BUA3 381 aaPredicted RBP14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 SLC39A8Q9C0K1 460 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 CYP4F12Q9HCS2 524 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 OSER1Q9NX31 292 aa14.66□□□□□ -0.06
SHROOM1-208ENST00000617339 PRKAG2Q9UGJ0 569 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms